ZRdb KZFP & Repeats
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LINE_X9_LINE

  • Name
    X9_LINE
  • Repbase
    X9_LINE
  • Type
    LINE
  • Emergence
    319.0 Mya
  • Dfam Id
    DF0001122
Description :

X9_LINE is found in both human and chicken at low copy number.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
taattttttatgatantagttcttggaagataaagataccntacaatgcctaaaaataaacctggatccgctaaagattcggcattttgctcccaagcttccgctagccgggagacgggcctgtctgctttcggtttcacaccatcgggaggtacagatttgacttatcaaacgatgtcggatttacttagtaagaactcggcggatattagtaaaaggttggacgcgattcaggctacaatggctgcaacggataagaagtttgaaagctttggttcaagactgcaggaggctgagaggaaaattgaagacacggagataacgatcgatggacacgacgctattctaactgagaataccaaagactgtaaagcgctgagaaatcgaattgatgacctggaaaacaagctcagattaagaaatgtcaggttggtaggggttcctgaaggcgcggagacgagagaagctgagatatttttttcgcaatggattatgaaggtgctggggatggataattttgaactccctctacaatgcgtcgtggcgcgtcatatccctgggaaggccaatcaggcaacaccccgcacggtncttgcggaatgtgcagctcttggaacgaggaacaacgttttgaaattggcacgtaaatctgagtccagttttcagggttcaagaatcttattttatccggattacagtcctgttcttcttcggcgtcggaaggcgtttgtgactgttaaaacgagaatgaaaaatatgggcctggaatacgcgttgctttatcctgccaggctgagggttcgctgtggaggccagacatatgtctttctttctcccacggatgctacagcgtttctggataagaaggaggcagactgcgcccgaacggtggaagaaatggcttcggaggactccggcacgaagagcgtattcttt
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 14 99.0 Weakly correlated
2 ZIM3 9 87.0 Weakly correlated
3 ZNF263 7 180.0 Weakly correlated
4 ZFP57 5 87.0 Weakly correlated
5 ZNF2 5 99.0 Weakly correlated
6 ZKSCAN8 5 160.0 Weakly correlated
7 ZNF766 5 43.0 Weakly correlated
8 ZFP37 4 99.0 Weakly correlated
9 ZNF394 4 99.0 Weakly correlated
10 ZKSCAN1 4 160.0 Weakly correlated
11 ZNF723 3 15.2 Weakly correlated
12 ZNF680 3 28.9 Weakly correlated
13 ZNF610 3 28.9 Weakly correlated
14 ZNF793 3 99.0 Weakly correlated
15 ZNF705B 2 28.9 Weakly correlated
16 ZNF701 2 28.9 Weakly correlated
17 ZNF597 2 94.0 Weakly correlated
18 ZNF589 2 28.9 Weakly correlated
19 ZNF584 2 99.0 Weakly correlated
20 ZNF558 2 99.0 Weakly correlated
21 ZNF547 2 74.0 Weakly correlated
22 ZNF479 2 6.4 Weakly correlated
23 ZFP28 2 99.0 Weakly correlated
24 ZNF92 2 28.9 Weakly correlated
25 ZNF197 2 99.0 Weakly correlated
26 ZFP69B 2 99.0 Weakly correlated
27 ZNF169 2 94.0 Weakly correlated
28 ZNF175 2 94.0 Weakly correlated
29 ZNF18 2 160.0 Weakly correlated
30 ZNF257 2 0.0 Weakly correlated
31 ZNF274 2 99.0 Weakly correlated
32 ZNF695 1 28.9 Weakly correlated
33 ZNF324 1 99.0 Weakly correlated
34 ZNF101 1 43.0 Weakly correlated
35 ZNF12 1 99.0 Weakly correlated
36 ZNF75D 1 94.0 Weakly correlated
37 ZNF133 1 99.0 Weakly correlated
38 ZNF705D 1 28.9 Weakly correlated
39 ZNF136 1 74.0 Weakly correlated
40 ZNF483 1 99.0 Weakly correlated
41 ZNF528 1 43.0 Weakly correlated
42 ZNF485 1 94.0 Weakly correlated
43 ZNF490 1 43.0 Weakly correlated
44 ZNF440 1 28.9 Weakly correlated
45 ZNF251 1 94.0 Weakly correlated
46 ZNF506 1 28.9 Weakly correlated
47 ZNF273 1 28.9 Weakly correlated
48 ZNF554 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 4 87.0 Weakly correlated
2 ZFP57 2 87.0 Weakly correlated
3 ZNF680 2 28.9 Weakly correlated
4 ZFP37 1 99.0 Weakly correlated
5 ZKSCAN8 1 160.0 Weakly correlated
6 ZNF705B 1 28.9 Weakly correlated
7 ZNF263 1 180.0 Weakly correlated
8 ZNF483 1 99.0 Weakly correlated
9 ZNF723 1 15.2 Weakly correlated
10 ZNF18 1 160.0 Weakly correlated
11 ZNF440 1 28.9 Weakly correlated
12 ZNF701 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats