ZRdb KZFP & Repeats
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LINE_X7C_LINE

  • Name
    X7C_LINE
  • Repbase
    X7C_LINE
  • Type
    LINE
  • Emergence
    319.0 Mya
  • Dfam Id
    DF0001142
Description :

Non-autonomous CR1 element.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gaggcgccctttgaaacttgagcgaggtaagtttaggacaaataaaaggaaatactacttcacacagtaggtaataaacttatggaactcattaccccaagaggtggtacaggcaggaaatataaatggattcaaaaagggtttggacaaatttatgaatgacagagccataaatggctncnaagagaagctgggatacacctaacctttaaggttgacgtcagggaagacagtca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 22 99.0 Weakly correlated
2 ZNF263 9 180.0 Weakly correlated
3 ZKSCAN1 8 160.0 Weakly correlated
4 ZNF766 8 43.0 Weakly correlated
5 ZFP37 7 99.0 Weakly correlated
6 ZNF394 6 99.0 Weakly correlated
7 ZNF589 6 28.9 Weakly correlated
8 ZNF2 6 99.0 Weakly correlated
9 ZIM3 5 87.0 Weakly correlated
10 ZKSCAN8 5 160.0 Weakly correlated
11 ZNF175 5 94.0 Weakly correlated
12 ZNF584 4 99.0 Weakly correlated
13 ZNF479 4 6.4 Weakly correlated
14 ZNF197 3 99.0 Weakly correlated
15 ZNF18 3 160.0 Weakly correlated
16 ZNF597 3 94.0 Weakly correlated
17 ZNF317 3 99.0 Weakly correlated
18 ZNF528 2 43.0 Weakly correlated
19 ZNF701 2 28.9 Weakly correlated
20 ZNF585B 2 99.0 Weakly correlated
21 ZNF75D 2 94.0 Weakly correlated
22 ZNF324 2 99.0 Weakly correlated
23 ZNF282 2 319.0 Highly correlated
24 ZFP28 2 99.0 Weakly correlated
25 ZNF723 1 15.2 Weakly correlated
26 ZNF93 1 8.6 Weakly correlated
27 ZNF679 1 28.9 Weakly correlated
28 ZNF778 1 74.0 Weakly correlated
29 ZNF808 1 19.6 Weakly correlated
30 ZNF91 1 6.0 Weakly correlated
31 RBAK 1 99.0 Weakly correlated
32 ZNF554 1 99.0 Weakly correlated
33 ZNF549 1 87.0 Weakly correlated
34 ZNF534 1 19.6 Weakly correlated
35 ZNF485 1 94.0 Weakly correlated
36 ZNF43 1 43.0 Weakly correlated
37 ZNF429 1 28.9 Weakly correlated
38 ZNF273 1 28.9 Weakly correlated
39 ZNF257 1 0.0 Weakly correlated
40 ZNF189 1 99.0 Weakly correlated
41 ZNF182 1 99.0 Weakly correlated
42 ZNF101 1 43.0 Weakly correlated
43 ZFP14 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZFP14 1 99.0 Weakly correlated
2 ZKSCAN1 1 160.0 Weakly correlated
3 ZFP28 1 99.0 Weakly correlated
4 ZNF257 1 0.0 Weakly correlated
5 ZNF528 1 43.0 Weakly correlated
6 ZNF75D 1 94.0 Weakly correlated
7 ZNF485 1 94.0 Weakly correlated
8 ZNF597 1 94.0 Weakly correlated
9 ZNF701 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats