ZRdb KZFP & Repeats
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LINE_X7B_LINE

  • Name
    X7B_LINE
  • Repbase
    X7B_LINE
  • Type
    LINE
  • Emergence
    319.0 Mya
  • Dfam Id
    DF0001120
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
caccaaattccaatacatgagtactagaaagctctttgaaacttaaaaaagataattttaggacaaataaaaggaagtactactttacacagcgggtagtaaacttatggaactcattactcccaaagaggtagtacaggctgaaaatataaataggttcaaaaaaggtttagataaattcatggatgatagatccataatgggttattaaaggaaattaggatgttttgaagacatccctaacctttga
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 23 99.0 Weakly correlated
2 ZFP37 7 99.0 Weakly correlated
3 ZNF679 7 28.9 Weakly correlated
4 ZNF394 7 99.0 Weakly correlated
5 ZNF766 5 43.0 Weakly correlated
6 ZNF705B 5 28.9 Weakly correlated
7 ZNF175 5 94.0 Weakly correlated
8 ZNF705D 4 28.9 Weakly correlated
9 ZKSCAN8 4 160.0 Weakly correlated
10 ZNF486 3 8.6 Weakly correlated
11 ZNF589 3 28.9 Weakly correlated
12 ZNF584 3 99.0 Weakly correlated
13 ZNF510 3 99.0 Weakly correlated
14 ZNF317 3 99.0 Weakly correlated
15 ZKSCAN1 3 160.0 Weakly correlated
16 ZNF263 3 180.0 Weakly correlated
17 ZNF197 3 99.0 Weakly correlated
18 ZNF18 3 160.0 Weakly correlated
19 ZNF534 2 19.6 Weakly correlated
20 ZIM3 2 87.0 Weakly correlated
21 ZNF701 2 28.9 Weakly correlated
22 ZNF680 2 28.9 Weakly correlated
23 ZNF101 2 43.0 Weakly correlated
24 ZNF723 2 15.2 Weakly correlated
25 ZNF597 2 94.0 Weakly correlated
26 ZNF75D 2 94.0 Weakly correlated
27 ZNF793 2 99.0 Weakly correlated
28 ZFP28 2 99.0 Weakly correlated
29 ZNF479 2 6.4 Weakly correlated
30 ZNF2 2 99.0 Weakly correlated
31 ZNF282 2 319.0 Highly correlated
32 ZNF92 1 28.9 Weakly correlated
33 ZFP69B 1 99.0 Weakly correlated
34 ZNF880 1 28.9 Weakly correlated
35 ZNF735 1 28.9 Weakly correlated
36 ZNF8 1 99.0 Weakly correlated
37 ZNF91 1 6.0 Weakly correlated
38 ZNF273 1 28.9 Weakly correlated
39 ZNF671 1 94.0 Weakly correlated
40 ZNF135 1 94.0 Weakly correlated
41 ZNF17 1 69.0 Weakly correlated
42 ZNF558 1 99.0 Weakly correlated
43 ZNF554 1 99.0 Weakly correlated
44 ZNF182 1 99.0 Weakly correlated
45 ZNF490 1 43.0 Weakly correlated
46 ZNF485 1 94.0 Weakly correlated
47 ZNF287 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF705D 3 28.9 Weakly correlated
2 ZFP28 1 99.0 Weakly correlated
3 ZNF485 1 94.0 Weakly correlated
4 ZNF671 1 94.0 Weakly correlated
5 ZNF18 1 160.0 Weakly correlated
6 ZNF287 1 99.0 Weakly correlated
7 ZNF701 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats