ZRdb KZFP & Repeats
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LINE_X7A_LINE

  • Name
    X7A_LINE
  • Repbase
    X7A_LINE
  • Type
    LINE
  • Emergence
    319.0 Mya
  • Dfam Id
    DF0001119
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
agacttgttcaccaaatcctggaatactagaattagaggcccccttgaagcttgaaagaggtaattttaggacaaataaaaggaagtnctactttacacagcaggggagtaaacttatggaactcattaccccaagaggtggtacaggctgaaaatataaatagnttcaaaaaagatttagataaattcatggatgatagatccatnaatgggttataagggaagtgggatgcagttaacctttgaggttgatgtcagggaggacag
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 30 99.0 Weakly correlated
2 ZNF394 16 99.0 Weakly correlated
3 ZNF766 14 43.0 Weakly correlated
4 ZNF2 12 99.0 Weakly correlated
5 ZFP69B 11 99.0 Weakly correlated
6 ZNF263 11 180.0 Weakly correlated
7 ZFP37 10 99.0 Weakly correlated
8 ZKSCAN1 9 160.0 Weakly correlated
9 ZNF324 8 99.0 Weakly correlated
10 ZNF101 7 43.0 Weakly correlated
11 ZNF589 6 28.9 Weakly correlated
12 ZKSCAN8 6 160.0 Weakly correlated
13 ZNF197 5 99.0 Weakly correlated
14 ZNF317 5 99.0 Weakly correlated
15 ZNF18 4 160.0 Weakly correlated
16 ZNF701 4 28.9 Weakly correlated
17 ZNF610 4 28.9 Weakly correlated
18 ZNF584 4 99.0 Weakly correlated
19 ZNF558 4 99.0 Weakly correlated
20 ZNF554 4 99.0 Weakly correlated
21 ZNF175 3 94.0 Weakly correlated
22 ZNF792 3 94.0 Weakly correlated
23 ZIM3 3 87.0 Weakly correlated
24 ZNF679 2 28.9 Weakly correlated
25 ZNF490 2 43.0 Weakly correlated
26 ZNF641 2 99.0 Weakly correlated
27 ZNF723 2 15.2 Weakly correlated
28 ZNF793 2 99.0 Weakly correlated
29 ZNF585A 2 99.0 Weakly correlated
30 ZNF585B 2 99.0 Weakly correlated
31 ZNF264 2 99.0 Weakly correlated
32 ZNF705D 1 28.9 Weakly correlated
33 ZNF8 1 99.0 Weakly correlated
34 ZNF816 1 28.9 Weakly correlated
35 ZNF705B 1 28.9 Weakly correlated
36 ZNF808 1 19.6 Weakly correlated
37 ZNF735 1 28.9 Weakly correlated
38 ZNF736 1 43.0 Weakly correlated
39 ZNF92 1 28.9 Weakly correlated
40 ZNF778 1 74.0 Weakly correlated
41 ZNF695 1 28.9 Weakly correlated
42 ZNF680 1 28.9 Weakly correlated
43 ZNF597 1 94.0 Weakly correlated
44 ZNF559 1 74.0 Weakly correlated
45 ZNF549 1 87.0 Weakly correlated
46 ZNF534 1 19.6 Weakly correlated
47 ZNF528 1 43.0 Weakly correlated
48 ZNF479 1 6.4 Weakly correlated
49 ZNF429 1 28.9 Weakly correlated
50 ZNF30 1 94.0 Weakly correlated
51 ZNF28 1 28.9 Weakly correlated
52 ZNF273 1 28.9 Weakly correlated
53 ZNF257 1 0.0 Weakly correlated
54 ZNF251 1 94.0 Weakly correlated
55 ZNF169 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 2 180.0 Weakly correlated
2 ZNF101 1 43.0 Weakly correlated
3 ZNF429 1 28.9 Weakly correlated
4 ZNF584 1 99.0 Weakly correlated
5 ZNF589 1 28.9 Weakly correlated
6 ZNF701 1 28.9 Weakly correlated
7 ZNF28 1 28.9 Weakly correlated
8 ZNF324 1 99.0 Weakly correlated
9 ZNF479 1 6.4 Weakly correlated
10 ZNF317 1 99.0 Weakly correlated
11 ZNF251 1 94.0 Weakly correlated
12 ZNF490 1 43.0 Weakly correlated
13 ZNF585A 1 99.0 Weakly correlated
14 ZNF766 1 43.0 Weakly correlated
15 ZNF273 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats