ZRdb KZFP & Repeats
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LINE_X6B_LINE

  • Name
    X6B_LINE
  • Repbase
    X6B_LINE
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001118
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
caccgtggatttaaaaantggttaaaagatcggaaanacaaggcaggaataaacgaccagttctcagnatggaaagaggttaatagtgagacgcccccgggatcgatatcgggaccggggttgttctatatattcatcaatgatctggaagnaggnctgaatagcgaggcgatgaaatttnctgatgatactaaattactttggttaataaaaactagggagaattntgagaaactccagacggatttaagcgnattaggggattgggcagcacgatggcagatgaaattcaacttggacaagtgnaaggtaatgcgcgttgggaaaaatagtctaaactnctcatgcacgctgatgggctctgaatttgctgnancctctnaggaaaaagatctaggagtcatcgcggacagctcaatgaagacgtctgctcagtgcgcagcggcagtcaaaaaagcgaataggatgttaggctgnattaagaagggaatgnagaataatatggaaaatattataatgccattacgtaagtcaacggtacgtgctcaccttgaatgctgcgttcagctnangncacgttacctnaaggaagataaggagngantaggagagttccagagaagggcaacgaagatggttagaggaatgnagggacttacgcgcgatgagagattgcaaaaactaggattatttagcctggaaaggagaagattnagaggagacttgattgagntatttaaaattatgaagggtatggacagggcgaacacgaaagtccttttttgccattcccntaatatgagaacaaggggncactcgatgaaattaanggncggtaaatttagaacaaataaaaggaaatacttcttcacgcagcgtgtagtcagcctgtggaattcactgccgcgggaggtcacngagtcaaatactgtggctggattttaaaaagggctggataattttatgaccantaataacatttgtagttatgcaagctaagataagggtaatcaaatctcatgcttcagggcataagctgatcgcctgcaggggtcaggaaggaatttctccc
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 50 99.0 Highly correlated
2 ZFP37 14 99.0 Highly correlated
3 ZKSCAN1 14 160.0 Weakly correlated
4 ZNF394 13 99.0 Highly correlated
5 ZNF2 13 99.0 Highly correlated
6 ZFP69B 12 99.0 Highly correlated
7 ZNF263 12 180.0 Weakly correlated
8 ZNF766 10 43.0 Weakly correlated
9 ZIM3 8 87.0 Moderately correlated
10 ZNF317 6 99.0 Highly correlated
11 ZNF584 6 99.0 Highly correlated
12 ZNF589 6 28.9 Weakly correlated
13 ZNF554 5 99.0 Highly correlated
14 ZKSCAN8 5 160.0 Weakly correlated
15 ZNF101 5 43.0 Weakly correlated
16 ZNF680 5 28.9 Weakly correlated
17 ZNF197 5 99.0 Highly correlated
18 ZNF701 4 28.9 Weakly correlated
19 ZNF558 4 99.0 Highly correlated
20 ZNF610 4 28.9 Weakly correlated
21 ZNF479 4 6.4 Weakly correlated
22 ZNF175 4 94.0 Moderately correlated
23 ZNF18 4 160.0 Weakly correlated
24 ZNF793 3 99.0 Highly correlated
25 ZNF350 3 99.0 Highly correlated
26 ZNF324 3 99.0 Highly correlated
27 ZNF534 3 19.6 Weakly correlated
28 ZNF705D 2 28.9 Weakly correlated
29 ZNF679 2 28.9 Weakly correlated
30 ZNF92 2 28.9 Weakly correlated
31 ZNF723 2 15.2 Weakly correlated
32 ZNF490 2 43.0 Weakly correlated
33 ZNF441 2 43.0 Weakly correlated
34 ZNF547 2 74.0 Weakly correlated
35 ZNF429 1 28.9 Weakly correlated
36 ZFP28 1 99.0 Highly correlated
37 ZNF8 1 99.0 Highly correlated
38 ZNF878 1 43.0 Weakly correlated
39 ZNF84 1 99.0 Highly correlated
40 ZNF17 1 69.0 Weakly correlated
41 ZNF792 1 94.0 Moderately correlated
42 ZNF778 1 74.0 Weakly correlated
43 ZNF28 1 28.9 Weakly correlated
44 ZNF727 1 19.6 Weakly correlated
45 ZNF30 1 94.0 Moderately correlated
46 ZNF705B 1 28.9 Weakly correlated
47 ZNF44 1 43.0 Weakly correlated
48 ZNF485 1 94.0 Moderately correlated
49 ZNF674 1 99.0 Highly correlated
50 ZNF525 1 19.6 Weakly correlated
51 ZNF528 1 43.0 Weakly correlated
52 ZNF565 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 2 87.0 Moderately correlated
2 ZNF350 2 99.0 Highly correlated
3 ZNF263 2 180.0 Weakly correlated
4 ZNF680 2 28.9 Weakly correlated
5 ZNF584 1 99.0 Highly correlated
6 ZFP37 1 99.0 Highly correlated
7 ZNF485 1 94.0 Moderately correlated
8 ZNF317 1 99.0 Highly correlated
9 ZNF589 1 28.9 Weakly correlated
10 ZNF793 1 99.0 Highly correlated
11 ZNF534 1 19.6 Weakly correlated
12 ZNF705D 1 28.9 Weakly correlated
13 ZNF701 1 28.9 Weakly correlated
14 ZNF44 1 43.0 Weakly correlated
15 ZNF528 1 43.0 Weakly correlated
16 ZNF382 1 99.0 Highly correlated
17 ZNF197 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats