ZRdb KZFP & Repeats
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LINE_X6A_LINE

  • Name
    X6A_LINE
  • Repbase
    X6A_LINE
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001117
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
agtcgnggttaaaaactggttaagagatagggaacgaagagtaggaataaatggccaattctcagnatggaaagaagttaatagcggggtgccccggggatcggtaccgggaccagtgttgttcaatatatttattaatgatctggaagatgaagtgaatagcgaggtgncaaaatttgctgatgacacaaaattatttaggttagtnaagactagggaggattntgaggaactccagaaggacctaacaaaactgggtaattgggcaacgcgatggcagatgaaattcaacgtagacaagtgcaaggtaatgcacattggaaggaacaatttaaactnctcgtacacgctgatgggttctgaattagttgtaacctctcaggaaaaagatctaggcgtcatcgtggacagctcaatgaagacgtctgctcaatgcgcagcggcagtcaaaaaagcgaataagacgttnggctgtattaagaagggaatggagaataatgcggaaaatattataatgncattntataaatcggcggtacgtcctcaccttgaatgctgcgttcagttttggtcacttcatctcaaagaagacanagcagaaataggaaaggtccagagaagggcaactaaaatggtcagaggaatggagggacttccgcgcgagganagattgaaaagattaggactctttagtctggaaagaggaaggccgagaggagatacgatagaggtgtacgaaataatgaatggtntagagaaggccaatcgggcgctcctntttaccccgtcccataatacaagaacaagaggncactcgatgaaattaaaaggcaacaaatttaaaacggataaaaggaaatacttttttacgcaacgtataattaacctgtggaactcgctgccgcaggatattattgaggcaaatagcttagtaagattcgagaaaggattagacatttatatgaataagaatagcatctgcagttacactagctaggataaaattacaagggctatcaatcctcatgcttcagggcataaactgatcaccagctggggtcaggaagaaatttcccct
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 38 99.0 Highly correlated
2 ZNF2 18 99.0 Highly correlated
3 ZNF766 15 43.0 Weakly correlated
4 ZNF394 15 99.0 Highly correlated
5 ZNF18 13 160.0 Weakly correlated
6 ZNF263 13 180.0 Weakly correlated
7 ZNF589 11 28.9 Weakly correlated
8 ZFP69B 9 99.0 Highly correlated
9 ZNF558 9 99.0 Highly correlated
10 ZNF554 8 99.0 Highly correlated
11 ZNF175 7 94.0 Moderately correlated
12 ZFP37 6 99.0 Highly correlated
13 ZNF584 6 99.0 Highly correlated
14 ZNF680 6 28.9 Weakly correlated
15 ZNF701 6 28.9 Weakly correlated
16 ZNF197 6 99.0 Highly correlated
17 ZNF101 6 43.0 Weakly correlated
18 ZKSCAN1 6 160.0 Weakly correlated
19 ZNF317 5 99.0 Highly correlated
20 ZNF324 5 99.0 Highly correlated
21 ZNF75D 5 94.0 Moderately correlated
22 ZIM3 5 87.0 Moderately correlated
23 ZNF610 4 28.9 Weakly correlated
24 ZNF597 4 94.0 Moderately correlated
25 ZNF792 4 94.0 Moderately correlated
26 ZNF534 4 19.6 Weakly correlated
27 ZNF705D 3 28.9 Weakly correlated
28 ZNF705B 3 28.9 Weakly correlated
29 ZNF679 3 28.9 Weakly correlated
30 ZKSCAN8 3 160.0 Weakly correlated
31 ZNF92 2 28.9 Weakly correlated
32 ZNF682 2 28.9 Weakly correlated
33 ZNF331 2 94.0 Moderately correlated
34 ZNF479 2 6.4 Weakly correlated
35 ZNF778 1 74.0 Weakly correlated
36 ZNF177 1 94.0 Moderately correlated
37 ZNF251 1 94.0 Moderately correlated
38 ZNF793 1 99.0 Highly correlated
39 ZNF808 1 19.6 Weakly correlated
40 ZNF75A 1 94.0 Moderately correlated
41 ZNF816 1 28.9 Weakly correlated
42 ZNF735 1 28.9 Weakly correlated
43 ZNF723 1 15.2 Weakly correlated
44 ZNF257 1 0.0 Weakly correlated
45 ZNF716 1 19.6 Weakly correlated
46 ZNF480 1 43.0 Weakly correlated
47 ZNF695 1 28.9 Weakly correlated
48 ZNF28 1 28.9 Weakly correlated
49 ZNF333 1 99.0 Highly correlated
50 ZNF425 1 94.0 Moderately correlated
51 ZNF585A 1 99.0 Highly correlated
52 ZNF429 1 28.9 Weakly correlated
53 ZNF440 1 28.9 Weakly correlated
54 ZNF468 1 28.9 Weakly correlated
55 ZNF549 1 87.0 Moderately correlated
56 ZNF486 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF75D 3 94.0 Moderately correlated
2 ZNF558 2 99.0 Highly correlated
3 ZNF584 2 99.0 Highly correlated
4 ZNF479 1 6.4 Weakly correlated
5 ZFP37 1 99.0 Highly correlated
6 ZNF705D 1 28.9 Weakly correlated
7 ZNF680 1 28.9 Weakly correlated
8 ZNF589 1 28.9 Weakly correlated
9 ZNF534 1 19.6 Weakly correlated
10 ZNF554 1 99.0 Highly correlated
11 ZNF480 1 43.0 Weakly correlated
12 ZNF778 1 74.0 Weakly correlated
13 ZNF597 1 94.0 Moderately correlated
14 ZNF197 1 99.0 Highly correlated
15 ZNF816 1 28.9 Weakly correlated
16 ZNF766 1 43.0 Weakly correlated
17 ZNF440 1 28.9 Weakly correlated
18 ZNF263 1 180.0 Weakly correlated
19 ZIM3 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats