ZRdb KZFP & Repeats
...

LINE_UCON86

  • Name
    UCON86
  • Repbase
    UCON86
  • Type
    LINE
  • Emergence
    319.0 Mya
  • Dfam Id
    DF0001333
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctgctgaaatcctcatccangccttcatctcctctcgccttgactattgcanctcccttctctatggcctccccaagtcccagctctccagactccagcacgtgcagaatgctgctgcccgccttctcacacgcacaaagaagtgcgaccacatcacccccatcctcaaacaactccactggctccccattcatttcaggatccagttcaaaattgccctccttgtttttaaaaccctccatggacttgctccagcctacctcacggaccttgtctctctctgctcccctccccgctccctccgctcgtctagcaccggcctcctctctgtcccttcacacaatctcgccgctgttggcgcgagagccttctcctctgcagctcctgccatctggaacagccttcctgtatctctccgcctcatcgactctccatctcttttcaaatctcatctnaaaatacatcttttctcccttgcctatgcctcttaatttctctctccctctgttattggccttatgactgaatgctttaatttattcaccatacaatgtctttacaccactgttttctgtaatttataccatatactgtccgctgtcttgtattatttaactctgtaaagcgttttgggatacagtttgtatgaaagacgctatacaaaataaagttgtattgtatt
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF263 5 180.0 Weakly correlated
2 ZNF382 5 99.0 Weakly correlated
3 ZNF18 4 160.0 Weakly correlated
4 ZNF2 3 99.0 Weakly correlated
5 ZNF766 3 43.0 Weakly correlated
6 ZNF394 3 99.0 Weakly correlated
7 ZNF101 2 43.0 Weakly correlated
8 ZNF175 2 94.0 Weakly correlated
9 ZNF182 2 99.0 Weakly correlated
10 ZNF589 2 28.9 Weakly correlated
11 ZNF257 2 0.0 Weakly correlated
12 ZNF324 2 99.0 Weakly correlated
13 ZNF679 1 28.9 Weakly correlated
14 ZNF823 1 43.0 Weakly correlated
15 ZNF695 1 28.9 Weakly correlated
16 ZNF707 1 74.0 Weakly correlated
17 ZNF786 1 99.0 Weakly correlated
18 ZFP37 1 99.0 Weakly correlated
19 ZNF610 1 28.9 Weakly correlated
20 ZNF584 1 99.0 Weakly correlated
21 ZNF534 1 19.6 Weakly correlated
22 ZNF334 1 99.0 Weakly correlated
23 ZNF251 1 94.0 Weakly correlated
24 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 1 94.0 Weakly correlated
2 ZNF18 1 160.0 Weakly correlated
3 ZNF263 1 180.0 Weakly correlated
4 ZNF695 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats