ZRdb KZFP & Repeats
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LTR_THE1D

  • Name
    THE1D
  • Repbase
    THE1D
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000820
Description :

THE1D is 80% similar to THE1A, 84% to THE1B, and 89% to THE1C.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatatggtttggctgtgtccccacccaaantctcatctcgaattgtaatccccataatccccacgtgtcgagggagggacctggtggaggtgattggatcatgggggcggtttcccccatgctgttctcgtgatagtgagtgagttctcacgagatctgatggttttataagtgtctggcagntttcccctgcnctcacncttctctctcctgccgccntgtgaagaaggtgcttgcttccccttcgccttccgccatgattgtaagtttcctgaggcctccccagccatgcggaactgtgagtcaattaaacctctttcctttataaattacccagtctcgggtagttctttatagcagtgtgaaaacggactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF679 5476 28.9 Moderately correlated
2 ZNF766 736 43.0 Highly correlated
3 ZNF707 265 74.0 Weakly correlated
4 ZNF100 232 28.9 Moderately correlated
5 ZNF382 209 99.0 Weakly correlated
6 ZNF705B 180 28.9 Moderately correlated
7 ZNF267 162 43.0 Highly correlated
8 ZNF705D 156 28.9 Moderately correlated
9 ZNF479 124 6.4 Weakly correlated
10 ZNF28 123 28.9 Moderately correlated
11 ZNF430 117 19.6 Weakly correlated
12 ZNF680 94 28.9 Moderately correlated
13 ZNF534 92 19.6 Weakly correlated
14 ZNF274 77 99.0 Weakly correlated
15 ZNF75D 76 94.0 Weakly correlated
16 ZNF263 75 180.0 Weakly correlated
17 ZNF18 59 160.0 Weakly correlated
18 ZNF251 55 94.0 Weakly correlated
19 ZNF723 51 15.2 Weakly correlated
20 ZNF394 44 99.0 Weakly correlated
21 ZNF589 40 28.9 Moderately correlated
22 ZNF597 38 94.0 Weakly correlated
23 ZNF554 37 99.0 Weakly correlated
24 ZNF320 32 28.9 Moderately correlated
25 ZNF175 31 94.0 Weakly correlated
26 ZIM3 27 87.0 Weakly correlated
27 ZNF778 27 74.0 Weakly correlated
28 ZNF197 23 99.0 Weakly correlated
29 ZFP69B 22 99.0 Weakly correlated
30 ZNF584 21 99.0 Weakly correlated
31 ZNF793 21 99.0 Weakly correlated
32 ZNF317 20 99.0 Weakly correlated
33 ZNF558 19 99.0 Weakly correlated
34 ZKSCAN8 18 160.0 Weakly correlated
35 ZNF257 18 0.0 Weakly correlated
36 ZNF2 18 99.0 Weakly correlated
37 ZNF33A 18 99.0 Weakly correlated
38 ZNF486 18 8.6 Weakly correlated
39 ZNF610 18 28.9 Moderately correlated
40 ZNF169 17 94.0 Weakly correlated
41 ZFP37 16 99.0 Weakly correlated
42 ZNF528 16 43.0 Highly correlated
43 ZKSCAN1 15 160.0 Weakly correlated
44 ZNF101 15 43.0 Highly correlated
45 ZNF141 15 43.0 Highly correlated
46 ZNF324 15 99.0 Weakly correlated
47 ZNF490 15 43.0 Highly correlated
48 ZNF506 14 28.9 Moderately correlated
49 ZNF485 13 94.0 Weakly correlated
50 ZNF585B 12 99.0 Weakly correlated
51 ZNF92 11 28.9 Moderately correlated
52 ZFP57 10 87.0 Weakly correlated
53 ZNF133 10 99.0 Weakly correlated
54 ZNF41 10 99.0 Weakly correlated
55 ZNF425 10 94.0 Weakly correlated
56 ZNF44 8 43.0 Highly correlated
57 ZNF549 8 87.0 Weakly correlated
58 ZNF816 8 28.9 Moderately correlated
59 ZNF140 7 99.0 Weakly correlated
60 ZNF468 7 28.9 Moderately correlated
61 ZNF510 7 99.0 Weakly correlated
62 ZNF671 7 94.0 Weakly correlated
63 ZNF701 7 28.9 Moderately correlated
64 ZNF248 6 99.0 Weakly correlated
65 ZNF283 6 99.0 Weakly correlated
66 ZNF334 6 99.0 Weakly correlated
67 ZNF429 6 28.9 Moderately correlated
68 ZNF471 6 94.0 Weakly correlated
69 ZNF823 6 43.0 Highly correlated
70 ZNF284 5 43.0 Highly correlated
71 ZNF519 5 19.6 Weakly correlated
72 ZNF677 5 99.0 Weakly correlated
73 ZNF789 5 99.0 Weakly correlated
74 ZKSCAN5 4 160.0 Weakly correlated
75 ZNF136 4 74.0 Weakly correlated
76 ZNF343 4 74.0 Weakly correlated
77 ZNF596 4 94.0 Weakly correlated
78 ZNF808 4 19.6 Weakly correlated
79 ZNF84 4 99.0 Weakly correlated
80 ZNF182 3 99.0 Weakly correlated
81 ZNF189 3 99.0 Weakly correlated
82 ZNF264 3 99.0 Weakly correlated
83 ZNF547 3 74.0 Weakly correlated
84 ZNF586 3 43.0 Highly correlated
85 ZNF675 3 8.6 Weakly correlated
86 ZNF716 3 19.6 Weakly correlated
87 ZNF735 3 28.9 Moderately correlated
88 ZNF786 3 99.0 Weakly correlated
89 ZNF792 3 94.0 Weakly correlated
90 ZNF878 3 43.0 Highly correlated
91 PRDM9 2 0.0 Weakly correlated
92 ZFP69 2 99.0 Weakly correlated
93 ZNF10 2 99.0 Weakly correlated
94 ZNF124 2 43.0 Highly correlated
95 ZNF160 2 74.0 Weakly correlated
96 ZNF17 2 69.0 Weakly correlated
97 ZNF250 2 99.0 Weakly correlated
98 ZNF26 2 99.0 Weakly correlated
99 ZNF331 2 94.0 Weakly correlated
100 ZNF337 2 43.0 Highly correlated
101 ZNF440 2 28.9 Moderately correlated
102 ZNF527 2 99.0 Weakly correlated
103 ZNF559 2 74.0 Weakly correlated
104 ZNF563 2 28.9 Moderately correlated
105 ZNF567 2 99.0 Weakly correlated
106 ZNF585A 2 99.0 Weakly correlated
107 ZNF700 2 28.9 Moderately correlated
108 ZNF8 2 99.0 Weakly correlated
109 ZFP30 1 99.0 Weakly correlated
110 ZNF114 1 28.9 Moderately correlated
111 ZNF12 1 99.0 Weakly correlated
112 ZNF157 1 99.0 Weakly correlated
113 ZNF222 1 43.0 Highly correlated
114 ZNF224 1 69.0 Weakly correlated
115 ZNF230 1 28.9 Moderately correlated
116 ZNF25 1 99.0 Weakly correlated
117 ZNF287 1 99.0 Weakly correlated
118 ZNF304 1 99.0 Weakly correlated
119 ZNF417 1 28.9 Moderately correlated
120 ZNF433 1 43.0 Highly correlated
121 ZNF436 1 180.0 Weakly correlated
122 ZNF441 1 43.0 Highly correlated
123 ZNF445 1 99.0 Weakly correlated
124 ZNF480 1 43.0 Highly correlated
125 ZNF483 1 99.0 Weakly correlated
126 ZNF530 1 28.9 Moderately correlated
127 ZNF544 1 0.0 Weakly correlated
128 ZNF560 1 43.0 Highly correlated
129 ZNF565 1 99.0 Weakly correlated
130 ZNF583 1 99.0 Weakly correlated
131 ZNF605 1 99.0 Weakly correlated
132 ZNF611 1 19.6 Weakly correlated
133 ZNF616 1 43.0 Highly correlated
134 ZNF682 1 28.9 Moderately correlated
135 ZNF695 1 28.9 Moderately correlated
136 ZNF727 1 19.6 Weakly correlated
137 ZNF736 1 43.0 Highly correlated
138 ZNF763 1 15.2 Weakly correlated
139 ZNF765 1 8.6 Weakly correlated
140 ZNF777 1 319.0 Weakly correlated
141 ZNF791 1 87.0 Weakly correlated
142 ZNF799 1 43.0 Highly correlated
143 ZNF81 1 99.0 Weakly correlated
144 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF679 5374 28.9 Moderately correlated
2 ZNF766 436 43.0 Highly correlated
3 ZNF267 147 43.0 Highly correlated
4 ZNF100 125 28.9 Moderately correlated
5 ZNF430 114 19.6 Weakly correlated
6 ZNF534 73 19.6 Weakly correlated
7 ZNF479 45 6.4 Weakly correlated
8 ZNF75D 42 94.0 Weakly correlated
9 ZNF705B 28 28.9 Moderately correlated
10 ZNF705D 25 28.9 Moderately correlated
11 ZNF597 23 94.0 Weakly correlated
12 ZNF723 18 15.2 Weakly correlated
13 ZNF680 18 28.9 Moderately correlated
14 ZNF263 16 180.0 Weakly correlated
15 ZNF320 16 28.9 Moderately correlated
16 ZNF141 14 43.0 Highly correlated
17 ZNF169 12 94.0 Weakly correlated
18 ZNF28 10 28.9 Moderately correlated
19 ZNF18 9 160.0 Weakly correlated
20 ZNF468 7 28.9 Moderately correlated
21 ZNF33A 7 99.0 Weakly correlated
22 ZNF671 6 94.0 Weakly correlated
23 ZNF133 6 99.0 Weakly correlated
24 ZNF283 6 99.0 Weakly correlated
25 ZNF490 5 43.0 Highly correlated
26 ZIM3 5 87.0 Weakly correlated
27 ZNF41 5 99.0 Weakly correlated
28 ZNF789 5 99.0 Weakly correlated
29 ZNF44 5 43.0 Highly correlated
30 ZNF485 5 94.0 Weakly correlated
31 ZNF343 4 74.0 Weakly correlated
32 ZNF251 4 94.0 Weakly correlated
33 ZNF596 4 94.0 Weakly correlated
34 ZFP57 4 87.0 Weakly correlated
35 ZNF549 4 87.0 Weakly correlated
36 ZKSCAN5 4 160.0 Weakly correlated
37 ZNF101 4 43.0 Highly correlated
38 ZNF823 4 43.0 Highly correlated
39 ZNF554 3 99.0 Weakly correlated
40 ZNF140 3 99.0 Weakly correlated
41 ZNF197 3 99.0 Weakly correlated
42 ZNF528 3 43.0 Highly correlated
43 ZNF317 3 99.0 Weakly correlated
44 ZNF257 3 0.0 Weakly correlated
45 ZNF816 3 28.9 Moderately correlated
46 ZNF382 3 99.0 Weakly correlated
47 ZNF707 2 74.0 Weakly correlated
48 PRDM9 2 0.0 Weakly correlated
49 ZNF778 2 74.0 Weakly correlated
50 ZNF677 2 99.0 Weakly correlated
51 ZNF589 2 28.9 Moderately correlated
52 ZNF506 2 28.9 Moderately correlated
53 ZNF584 2 99.0 Weakly correlated
54 ZFP37 1 99.0 Weakly correlated
55 ZNF394 1 99.0 Weakly correlated
56 ZNF284 1 43.0 Highly correlated
57 ZNF264 1 99.0 Weakly correlated
58 ZNF793 1 99.0 Weakly correlated
59 ZNF175 1 94.0 Weakly correlated
60 ZNF2 1 99.0 Weakly correlated
61 ZNF440 1 28.9 Moderately correlated
62 ZNF610 1 28.9 Moderately correlated
63 ZNF483 1 99.0 Weakly correlated
64 ZNF189 1 99.0 Weakly correlated
65 ZNF736 1 43.0 Highly correlated
66 ZNF417 1 28.9 Moderately correlated
67 ZNF701 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF141 43.0 Highly correlated
2 ZNF18 160.0 Weakly correlated
3 ZNF267 43.0 Highly correlated
4 ZNF33A 99.0 Weakly correlated
5 ZNF479 6.4 Weakly correlated
6 ZNF534 19.6 Weakly correlated
7 ZNF597 94.0 Weakly correlated
8 ZNF671 94.0 Weakly correlated
9 ZNF679 28.9 Moderately correlated
10 ZNF75D 94.0 Weakly correlated