ZRdb KZFP & Repeats
...

LTR_THE1D-INT

  • Name
    THE1D-INT
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    28.9 Mya
  • Dfam Id
    DF0001256
Description :

Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gaaaattggtaccgggagagtggggcactgctataaagatacctgaaaatgtggaagcgactttggaactgggtaacgggcagaggttggaacagtttggagggctcagaagaagacaggaagatgtgggaaagtttggaacttcctagagacttgttgaatggttttgaccaaaatgctgatagtgatatggacaatgaagtccaggctgaggtggtctcagatggagatgaggaacttattgggaactggagtaaaggtcactcttgctatgctttagcaaagagactggcggcattttgcccctgccctagagatctgtggaactttgaacttgagagagatgatttagggtatctggcggaagaaatttctaagcagcaaagcattcaagatgtgacctggctgcttctaaaagcgtacggtcatatgcgttcacaaagagatggtctgaaattggaacttatgtttaaaagggaagcagagcataaaagtttggaaaatttgcagcctgaccatgcggtagaaaagaaaaacccattttctggggagaaattcaagccggctgcagaaatttgcataagtaacgaggagccgaatgttaatagccaagacaatggggaaaatgtctccagggcatntcagagaccttcgcggcagcccctcccatcacaggcccggaggcctaggagggaaaaatggtttcgtgggccgggcccagggccccgctgctctgtgcagcctcgggacatggcgccctgcgtcccagccgctccagctccagccgtggctaaaaggggccaaggtacagctcgggccgttgcttcagagggtgcaagccccaagccttggcggcttccacgtggtgttgggcctgcgggtgcgcagaagncaagagttgaggtttgggaacctccgcctagatttcagaggatgtatggaaacgcctggatgtccaggcagaagtctgctgcaggggcggagccctcatggagaacctctgctagggcagtgcggaggggaaatgtggggttggagcccccacacagagtccccactggggcactgcctagtggagctgtgagaagagggccaccgtcctccagaccccagaatggtagatccaccgacagcttgcaccgtgcgcctggaaaagccgcaggcactcaacgccagcccgtgaaagcagccgcgggggctgtaccctgcagagccacaggggcggagctgcccaaggccntgggagcccaccccttgcatcagcgtgncctggatgtgagacatggagtcaaaggagattattttggagctttaagatttaatgactgccctgctgggtttcggacttgcatggggcctgtagcccctttgttttggccaatttctcccatttggaatgggagcatttacccaatgcctgtacccccattgtatcttggaagtaactaacttgcttttgattttacaggctcataggcggaagggacttgccttgtctcagatgagactttggacttggacttttgagttaatgctggaatgagttaagactttgggggactgttgggaaggcatgattgtgttttgaaatgtgagaaggacatgagatttgggaggggccaggggcggaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF585B 993 99.0 Weakly correlated
2 ZNF486 566 8.6 Weakly correlated
3 ZNF679 539 28.9 Highly correlated
4 ZNF675 504 8.6 Weakly correlated
5 ZNF586 484 43.0 Weakly correlated
6 ZNF793 295 99.0 Weakly correlated
7 ZNF707 285 74.0 Weakly correlated
8 ZNF506 125 28.9 Highly correlated
9 ZNF765 111 8.6 Weakly correlated
10 ZNF479 75 6.4 Weakly correlated
11 ZNF320 46 28.9 Highly correlated
12 ZNF44 39 43.0 Weakly correlated
13 ZNF680 35 28.9 Highly correlated
14 ZNF28 33 28.9 Highly correlated
15 ZNF550 32 94.0 Weakly correlated
16 ZNF382 28 99.0 Weakly correlated
17 ZNF560 27 43.0 Weakly correlated
18 ZNF766 22 43.0 Weakly correlated
19 ZNF75D 21 94.0 Weakly correlated
20 ZNF189 18 99.0 Weakly correlated
21 ZNF468 18 28.9 Highly correlated
22 ZNF558 18 99.0 Weakly correlated
23 ZFP57 16 87.0 Weakly correlated
24 ZNF317 16 99.0 Weakly correlated
25 ZNF682 16 28.9 Highly correlated
26 ZNF547 15 74.0 Weakly correlated
27 ZNF786 14 99.0 Weakly correlated
28 ZNF92 14 28.9 Highly correlated
29 ZNF251 13 94.0 Weakly correlated
30 ZNF2 13 99.0 Weakly correlated
31 ZNF549 13 87.0 Weakly correlated
32 ZNF18 12 160.0 Weakly correlated
33 ZNF528 12 43.0 Weakly correlated
34 ZNF534 12 19.6 Moderately correlated
35 ZNF705B 12 28.9 Highly correlated
36 ZNF141 11 43.0 Weakly correlated
37 ZIM3 10 87.0 Weakly correlated
38 ZNF263 10 180.0 Weakly correlated
39 ZNF274 10 99.0 Weakly correlated
40 ZNF554 10 99.0 Weakly correlated
41 ZNF100 9 28.9 Highly correlated
42 ZNF230 9 28.9 Highly correlated
43 ZNF169 8 94.0 Weakly correlated
44 ZNF530 8 28.9 Highly correlated
45 ZNF674 8 99.0 Weakly correlated
46 ZNF778 8 74.0 Weakly correlated
47 ZNF705D 7 28.9 Highly correlated
48 ZNF735 7 28.9 Highly correlated
49 ZNF730 6 19.6 Moderately correlated
50 ZNF114 5 28.9 Highly correlated
51 ZNF257 5 0.0 Weakly correlated
52 ZNF394 5 99.0 Weakly correlated
53 ZNF483 5 99.0 Weakly correlated
54 ZNF324 4 99.0 Weakly correlated
55 ZNF490 4 43.0 Weakly correlated
56 ZNF519 4 19.6 Moderately correlated
57 ZNF610 4 28.9 Highly correlated
58 ZNF701 4 28.9 Highly correlated
59 ZKSCAN8 3 160.0 Weakly correlated
60 ZNF124 3 43.0 Weakly correlated
61 ZNF157 3 99.0 Weakly correlated
62 ZNF182 3 99.0 Weakly correlated
63 ZNF197 3 99.0 Weakly correlated
64 ZNF302 3 43.0 Weakly correlated
65 ZNF334 3 99.0 Weakly correlated
66 ZNF510 3 99.0 Weakly correlated
67 ZNF66 3 0.0 Weakly correlated
68 ZNF684 3 99.0 Weakly correlated
69 ZNF723 3 15.2 Moderately correlated
70 ZNF850 3 28.9 Highly correlated
71 ZFP37 2 99.0 Weakly correlated
72 ZNF17 2 69.0 Weakly correlated
73 ZNF267 2 43.0 Weakly correlated
74 ZNF33A 2 99.0 Weakly correlated
75 ZNF41 2 99.0 Weakly correlated
76 ZNF425 2 94.0 Weakly correlated
77 ZNF429 2 28.9 Highly correlated
78 ZNF485 2 94.0 Weakly correlated
79 ZNF559 2 74.0 Weakly correlated
80 ZNF585A 2 99.0 Weakly correlated
81 ZNF589 2 28.9 Highly correlated
82 ZNF605 2 99.0 Weakly correlated
83 ZNF649 2 28.9 Highly correlated
84 ZNF808 2 19.6 Moderately correlated
85 ZNF816 2 28.9 Highly correlated
86 ZFP14 1 99.0 Weakly correlated
87 ZKSCAN1 1 160.0 Weakly correlated
88 ZNF101 1 43.0 Weakly correlated
89 ZNF133 1 99.0 Weakly correlated
90 ZNF136 1 74.0 Weakly correlated
91 ZNF140 1 99.0 Weakly correlated
92 ZNF175 1 94.0 Weakly correlated
93 ZNF211 1 94.0 Weakly correlated
94 ZNF222 1 43.0 Weakly correlated
95 ZNF264 1 99.0 Weakly correlated
96 ZNF284 1 43.0 Weakly correlated
97 ZNF30 1 94.0 Weakly correlated
98 ZNF347 1 43.0 Weakly correlated
99 ZNF418 1 43.0 Weakly correlated
100 ZNF445 1 99.0 Weakly correlated
101 ZNF471 1 94.0 Weakly correlated
102 ZNF480 1 43.0 Weakly correlated
103 ZNF557 1 15.2 Moderately correlated
104 ZNF561 1 43.0 Weakly correlated
105 ZNF563 1 28.9 Highly correlated
106 ZNF57 1 28.9 Highly correlated
107 ZNF597 1 94.0 Weakly correlated
108 ZNF611 1 19.6 Moderately correlated
109 ZNF700 1 28.9 Highly correlated
110 ZNF727 1 19.6 Moderately correlated
111 ZNF736 1 43.0 Weakly correlated
112 ZNF747 1 43.0 Weakly correlated
113 ZNF777 1 319.0 Weakly correlated
114 ZNF823 1 43.0 Weakly correlated
115 ZNF878 1 43.0 Weakly correlated
116 ZNF891 1 99.0 Weakly correlated
117 ZNF8 1 99.0 Weakly correlated
118 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF585B 519 99.0 Weakly correlated
2 ZNF675 491 8.6 Weakly correlated
3 ZNF586 477 43.0 Weakly correlated
4 ZNF793 200 99.0 Weakly correlated
5 ZNF707 148 74.0 Weakly correlated
6 ZNF506 120 28.9 Highly correlated
7 ZNF486 38 8.6 Weakly correlated
8 ZNF479 37 6.4 Weakly correlated
9 ZNF44 35 43.0 Weakly correlated
10 ZNF550 31 94.0 Weakly correlated
11 ZNF320 19 28.9 Highly correlated
12 ZNF468 12 28.9 Highly correlated
13 ZNF75D 11 94.0 Weakly correlated
14 ZNF680 8 28.9 Highly correlated
15 ZNF679 8 28.9 Highly correlated
16 ZNF141 7 43.0 Weakly correlated
17 ZNF28 6 28.9 Highly correlated
18 ZIM3 6 87.0 Weakly correlated
19 ZFP57 5 87.0 Weakly correlated
20 ZNF674 5 99.0 Weakly correlated
21 ZNF530 5 28.9 Highly correlated
22 ZNF560 5 43.0 Weakly correlated
23 ZNF735 4 28.9 Highly correlated
24 ZNF534 3 19.6 Moderately correlated
25 ZNF682 3 28.9 Highly correlated
26 ZNF483 3 99.0 Weakly correlated
27 ZNF317 3 99.0 Weakly correlated
28 ZNF766 2 43.0 Weakly correlated
29 ZNF585A 2 99.0 Weakly correlated
30 ZNF558 2 99.0 Weakly correlated
31 ZNF485 2 94.0 Weakly correlated
32 ZNF605 1 99.0 Weakly correlated
33 ZNF765 1 8.6 Weakly correlated
34 ZFP14 1 99.0 Weakly correlated
35 ZNF302 1 43.0 Weakly correlated
36 ZNF267 1 43.0 Weakly correlated
37 ZNF197 1 99.0 Weakly correlated
38 ZNF816 1 28.9 Highly correlated
39 ZNF257 1 0.0 Weakly correlated
40 ZKSCAN8 1 160.0 Weakly correlated
41 ZNF211 1 94.0 Weakly correlated
42 ZNF528 1 43.0 Weakly correlated
43 ZNF490 1 43.0 Weakly correlated
44 ZNF684 1 99.0 Weakly correlated
45 ZNF778 1 74.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF141 43.0 Weakly correlated
2 ZNF28 28.9 Highly correlated
3 ZNF320 28.9 Highly correlated
4 ZNF468 28.9 Highly correlated
5 ZNF486 8.6 Weakly correlated
6 ZNF506 28.9 Highly correlated
7 ZNF585B 99.0 Weakly correlated
8 ZNF680 28.9 Highly correlated
9 ZNF75D 94.0 Weakly correlated
10 ZNF793 99.0 Weakly correlated