ZRdb KZFP & Repeats
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LTR_THE1C

  • Name
    THE1C
  • Repbase
    THE1C
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000819
Description :

An LTR of the THE1C retrovirus-like MaLR element. Has 5 bp TSDs. Thissubfamily is an intermediate between THE1B and MSTA, and is 90% similarto THE1B over the entire length.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatatggtttggctgtgtccccacccaaatctcatcttgaattgtagttcccataatccccacgtgtcgtgggagggacccggtgggaggtaattgaatcatgggggcggttacccccatgctgttctcgtgatagtgagtgagttctcacgagatctgatggttttataaggggcttttcccccttcgctcggcacttctccttcctgccgccatgtgaagaaggacgtgtttgcttccccttccgccatgattgtaagtttcctgaggcctccccagccatgcngaactgtgagtcaattaaacctctttcctttataaattacccagtctcgggtatgtctttattagcagcgtgagaacggactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF679 4424 28.9 Moderately correlated
2 ZNF267 733 43.0 Highly correlated
3 ZNF766 464 43.0 Highly correlated
4 ZNF707 211 74.0 Weakly correlated
5 ZNF382 155 99.0 Weakly correlated
6 ZNF100 103 28.9 Moderately correlated
7 ZNF534 76 19.6 Weakly correlated
8 ZNF597 74 94.0 Weakly correlated
9 ZNF28 66 28.9 Moderately correlated
10 ZNF274 65 99.0 Weakly correlated
11 ZNF680 64 28.9 Moderately correlated
12 ZNF75D 64 94.0 Weakly correlated
13 ZNF479 50 6.4 Weakly correlated
14 ZNF430 43 19.6 Weakly correlated
15 ZNF251 41 94.0 Weakly correlated
16 ZNF263 35 180.0 Weakly correlated
17 ZNF778 31 74.0 Weakly correlated
18 ZNF394 30 99.0 Weakly correlated
19 ZIM3 26 87.0 Weakly correlated
20 ZNF18 25 160.0 Weakly correlated
21 ZNF589 25 28.9 Moderately correlated
22 ZNF705B 25 28.9 Moderately correlated
23 ZNF175 24 94.0 Weakly correlated
24 ZNF793 24 99.0 Weakly correlated
25 ZNF723 23 15.2 Weakly correlated
26 ZNF486 22 8.6 Weakly correlated
27 ZNF558 22 99.0 Weakly correlated
28 ZNF320 21 28.9 Moderately correlated
29 ZFP57 19 87.0 Weakly correlated
30 ZFP69B 19 99.0 Weakly correlated
31 ZNF324 19 99.0 Weakly correlated
32 ZNF317 18 99.0 Weakly correlated
33 ZNF585B 18 99.0 Weakly correlated
34 ZNF554 17 99.0 Weakly correlated
35 ZNF705D 17 28.9 Moderately correlated
36 ZNF2 16 99.0 Weakly correlated
37 ZKSCAN8 14 160.0 Weakly correlated
38 ZNF197 14 99.0 Weakly correlated
39 ZNF44 14 43.0 Highly correlated
40 ZFP37 13 99.0 Weakly correlated
41 ZKSCAN1 13 160.0 Weakly correlated
42 ZNF584 13 99.0 Weakly correlated
43 ZNF257 12 0.0 Weakly correlated
44 ZNF490 12 43.0 Highly correlated
45 ZNF468 11 28.9 Moderately correlated
46 ZNF133 10 99.0 Weakly correlated
47 ZNF140 9 99.0 Weakly correlated
48 ZNF141 9 43.0 Highly correlated
49 ZNF610 9 28.9 Moderately correlated
50 ZNF169 8 94.0 Weakly correlated
51 ZNF425 8 94.0 Weakly correlated
52 ZNF485 8 94.0 Weakly correlated
53 ZNF92 8 28.9 Moderately correlated
54 ZNF101 7 43.0 Highly correlated
55 ZNF283 7 99.0 Weakly correlated
56 ZNF441 7 43.0 Highly correlated
57 ZNF506 7 28.9 Moderately correlated
58 ZNF202 6 160.0 Weakly correlated
59 ZNF519 6 19.6 Weakly correlated
60 ZNF264 5 99.0 Weakly correlated
61 ZNF528 5 43.0 Highly correlated
62 ZNF677 5 99.0 Weakly correlated
63 ZNF682 5 28.9 Moderately correlated
64 ZNF808 5 19.6 Weakly correlated
65 ZNF84 5 99.0 Weakly correlated
66 ZNF331 4 94.0 Weakly correlated
67 ZNF33A 4 99.0 Weakly correlated
68 ZNF343 4 74.0 Weakly correlated
69 ZNF41 4 99.0 Weakly correlated
70 ZNF586 4 43.0 Highly correlated
71 ZNF675 4 8.6 Weakly correlated
72 ZNF17 3 69.0 Weakly correlated
73 ZNF284 3 43.0 Highly correlated
74 ZNF334 3 99.0 Weakly correlated
75 ZNF471 3 94.0 Weakly correlated
76 ZNF547 3 74.0 Weakly correlated
77 ZNF549 3 87.0 Weakly correlated
78 ZNF8 3 99.0 Weakly correlated
79 ZFP28 2 99.0 Weakly correlated
80 ZNF136 2 74.0 Weakly correlated
81 ZNF248 2 99.0 Weakly correlated
82 ZNF337 2 43.0 Highly correlated
83 ZNF350 2 99.0 Weakly correlated
84 ZNF429 2 28.9 Moderately correlated
85 ZNF480 2 43.0 Highly correlated
86 ZNF695 2 28.9 Moderately correlated
87 ZNF765 2 8.6 Weakly correlated
88 ZNF792 2 94.0 Weakly correlated
89 ZNF10 1 99.0 Weakly correlated
90 ZNF135 1 94.0 Weakly correlated
91 ZNF157 1 99.0 Weakly correlated
92 ZNF182 1 99.0 Weakly correlated
93 ZNF189 1 99.0 Weakly correlated
94 ZNF211 1 94.0 Weakly correlated
95 ZNF26 1 99.0 Weakly correlated
96 ZNF282 1 319.0 Weakly correlated
97 ZNF304 1 99.0 Weakly correlated
98 ZNF347 1 43.0 Highly correlated
99 ZNF354C 1 99.0 Weakly correlated
100 ZNF420 1 94.0 Weakly correlated
101 ZNF426 1 87.0 Weakly correlated
102 ZNF43 1 43.0 Highly correlated
103 ZNF461 1 99.0 Weakly correlated
104 ZNF510 1 99.0 Weakly correlated
105 ZNF529 1 99.0 Weakly correlated
106 ZNF530 1 28.9 Moderately correlated
107 ZNF567 1 99.0 Weakly correlated
108 ZNF583 1 99.0 Weakly correlated
109 ZNF585A 1 99.0 Weakly correlated
110 ZNF607 1 43.0 Highly correlated
111 ZNF649 1 28.9 Moderately correlated
112 ZNF671 1 94.0 Weakly correlated
113 ZNF674 1 99.0 Weakly correlated
114 ZNF701 1 28.9 Moderately correlated
115 ZNF727 1 19.6 Weakly correlated
116 ZNF730 1 19.6 Weakly correlated
117 ZNF823 1 43.0 Highly correlated
118 ZNF845 1 28.9 Moderately correlated
119 ZNF85 1 28.9 Moderately correlated
120 ZNF878 1 43.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF679 4364 28.9 Moderately correlated
2 ZNF267 717 43.0 Highly correlated
3 ZNF766 295 43.0 Highly correlated
4 ZNF597 70 94.0 Weakly correlated
5 ZNF100 55 28.9 Moderately correlated
6 ZNF534 49 19.6 Weakly correlated
7 ZNF430 42 19.6 Weakly correlated
8 ZNF75D 32 94.0 Weakly correlated
9 ZNF680 20 28.9 Moderately correlated
10 ZNF479 12 6.4 Weakly correlated
11 ZNF251 9 94.0 Weakly correlated
12 ZNF723 8 15.2 Weakly correlated
13 ZNF263 8 180.0 Weakly correlated
14 ZNF274 7 99.0 Weakly correlated
15 ZNF283 7 99.0 Weakly correlated
16 ZNF468 7 28.9 Moderately correlated
17 ZNF141 6 43.0 Highly correlated
18 ZNF28 5 28.9 Moderately correlated
19 ZNF778 5 74.0 Weakly correlated
20 ZNF18 4 160.0 Weakly correlated
21 ZNF485 4 94.0 Weakly correlated
22 ZNF589 4 28.9 Moderately correlated
23 ZNF707 3 74.0 Weakly correlated
24 ZFP57 3 87.0 Weakly correlated
25 ZNF197 3 99.0 Weakly correlated
26 ZNF320 3 28.9 Moderately correlated
27 ZNF677 3 99.0 Weakly correlated
28 ZNF133 3 99.0 Weakly correlated
29 ZNF554 2 99.0 Weakly correlated
30 ZNF343 2 74.0 Weakly correlated
31 ZNF44 2 43.0 Highly correlated
32 ZNF705D 2 28.9 Moderately correlated
33 ZIM3 2 87.0 Weakly correlated
34 ZNF175 2 94.0 Weakly correlated
35 ZNF140 2 99.0 Weakly correlated
36 ZNF169 2 94.0 Weakly correlated
37 ZNF506 2 28.9 Moderately correlated
38 ZNF793 2 99.0 Weakly correlated
39 ZNF705B 1 28.9 Moderately correlated
40 ZNF101 1 43.0 Highly correlated
41 ZNF41 1 99.0 Weakly correlated
42 ZNF585B 1 99.0 Weakly correlated
43 ZNF257 1 0.0 Weakly correlated
44 ZNF33A 1 99.0 Weakly correlated
45 ZNF584 1 99.0 Weakly correlated
46 ZNF675 1 8.6 Weakly correlated
47 ZNF671 1 94.0 Weakly correlated
48 ZNF350 1 99.0 Weakly correlated
49 ZNF682 1 28.9 Moderately correlated
50 ZNF324 1 99.0 Weakly correlated
51 ZNF202 1 160.0 Weakly correlated
52 ZNF382 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF100 28.9 Moderately correlated
2 ZNF141 43.0 Highly correlated
3 ZNF263 180.0 Weakly correlated
4 ZNF267 43.0 Highly correlated
5 ZNF274 99.0 Weakly correlated
6 ZNF468 28.9 Moderately correlated
7 ZNF479 6.4 Weakly correlated
8 ZNF534 19.6 Weakly correlated
9 ZNF597 94.0 Weakly correlated
10 ZNF679 28.9 Moderately correlated
11 ZNF75D 94.0 Weakly correlated