ZRdb KZFP & Repeats
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LTR_THE1B

  • Name
    THE1B
  • Repbase
    THE1B
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000818
Description :

An LTR of the THE1B retrovirus-like MaLR element. Has 5 bp TSDs. Thissubfamily is an intermediate between THE1A and THE1C, and is 90%similar to both over the entire length.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatatggtttggctgtgtccccacccaaatctcatcttgaattgtagctcccataattcccacgtgtcgtgggagggacccggtgggaggtaattgaatcatgggggcgggtctttcccgtgctgttctcgtgatagtgaataagtctcacgagatctgatggttttataaaggggagttcccctgcacangctctcttgcctgccgccatgtaagacgtgnctttgctcctccttcgccttccgccatgattgtgaggcctccccagccacgtggaactgtgagtccattaaacctctttcctttataaattacccagtctcgggtatgtctttatcagcagcgtgaaaacggactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF585B 2349 99.0 Weakly correlated
2 ZNF486 1467 8.6 Weakly correlated
3 ZNF675 1181 8.6 Weakly correlated
4 ZNF586 1156 43.0 Highly correlated
5 ZNF707 821 74.0 Weakly correlated
6 ZNF793 733 99.0 Weakly correlated
7 ZNF506 287 28.9 Moderately correlated
8 ZNF765 266 8.6 Weakly correlated
9 ZNF479 226 6.4 Weakly correlated
10 ZNF766 98 43.0 Highly correlated
11 ZNF28 93 28.9 Moderately correlated
12 ZNF75D 86 94.0 Weakly correlated
13 ZNF320 66 28.9 Moderately correlated
14 ZNF679 66 28.9 Moderately correlated
15 ZNF468 64 28.9 Moderately correlated
16 ZNF682 59 28.9 Moderately correlated
17 ZNF786 53 99.0 Weakly correlated
18 ZNF44 48 43.0 Highly correlated
19 ZNF550 48 94.0 Weakly correlated
20 ZNF680 46 28.9 Moderately correlated
21 ZNF317 43 99.0 Weakly correlated
22 ZNF560 40 43.0 Highly correlated
23 ZNF251 35 94.0 Weakly correlated
24 ZNF189 34 99.0 Weakly correlated
25 ZNF382 33 99.0 Weakly correlated
26 ZFP57 31 87.0 Weakly correlated
27 ZNF534 30 19.6 Weakly correlated
28 ZNF778 30 74.0 Weakly correlated
29 ZNF528 21 43.0 Highly correlated
30 ZNF141 20 43.0 Highly correlated
31 ZNF263 17 180.0 Weakly correlated
32 ZNF490 17 43.0 Highly correlated
33 ZNF549 17 87.0 Weakly correlated
34 ZNF530 16 28.9 Moderately correlated
35 ZNF92 14 28.9 Moderately correlated
36 ZNF18 13 160.0 Weakly correlated
37 ZNF230 11 28.9 Moderately correlated
38 ZNF674 11 99.0 Weakly correlated
39 ZNF705D 11 28.9 Moderately correlated
40 ZIM3 10 87.0 Weakly correlated
41 ZNF554 10 99.0 Weakly correlated
42 ZNF723 10 15.2 Weakly correlated
43 ZNF257 9 0.0 Weakly correlated
44 ZNF334 9 99.0 Weakly correlated
45 ZNF519 9 19.6 Weakly correlated
46 ZNF735 9 28.9 Moderately correlated
47 ZNF324 8 99.0 Weakly correlated
48 ZNF610 8 28.9 Moderately correlated
49 ZNF730 8 19.6 Weakly correlated
50 ZKSCAN1 7 160.0 Weakly correlated
51 ZNF26 7 99.0 Weakly correlated
52 ZNF2 7 99.0 Weakly correlated
53 ZNF101 6 43.0 Highly correlated
54 ZNF274 6 99.0 Weakly correlated
55 ZNF33A 6 99.0 Weakly correlated
56 ZNF394 6 99.0 Weakly correlated
57 ZNF547 6 74.0 Weakly correlated
58 ZNF558 6 99.0 Weakly correlated
59 ZNF100 5 28.9 Moderately correlated
60 ZNF483 5 99.0 Weakly correlated
61 ZNF485 5 94.0 Weakly correlated
62 ZFP69B 4 99.0 Weakly correlated
63 ZNF41 4 99.0 Weakly correlated
64 ZNF425 4 94.0 Weakly correlated
65 ZNF441 4 43.0 Highly correlated
66 ZNF605 4 99.0 Weakly correlated
67 ZNF701 4 28.9 Moderately correlated
68 ZNF705B 4 28.9 Moderately correlated
69 ZNF850 4 28.9 Moderately correlated
70 ZFP37 3 99.0 Weakly correlated
71 ZKSCAN8 3 160.0 Weakly correlated
72 ZNF124 3 43.0 Highly correlated
73 ZNF140 3 99.0 Weakly correlated
74 ZNF17 3 69.0 Weakly correlated
75 ZNF417 3 28.9 Moderately correlated
76 ZNF510 3 99.0 Weakly correlated
77 ZNF160 2 74.0 Weakly correlated
78 ZNF264 2 99.0 Weakly correlated
79 ZNF283 2 99.0 Weakly correlated
80 ZNF429 2 28.9 Moderately correlated
81 ZNF471 2 94.0 Weakly correlated
82 ZNF559 2 74.0 Weakly correlated
83 ZNF597 2 94.0 Weakly correlated
84 ZNF671 2 94.0 Weakly correlated
85 ZNF684 2 99.0 Weakly correlated
86 ZNF695 2 28.9 Moderately correlated
87 ZNF700 2 28.9 Moderately correlated
88 ZNF716 2 19.6 Weakly correlated
89 ZNF747 2 43.0 Highly correlated
90 ZNF763 2 15.2 Weakly correlated
91 ZNF789 2 99.0 Weakly correlated
92 ZNF799 2 43.0 Highly correlated
93 ZNF808 2 19.6 Weakly correlated
94 ZNF84 2 99.0 Weakly correlated
95 PRDM9 1 0.0 Weakly correlated
96 ZNF10 1 99.0 Weakly correlated
97 ZNF114 1 28.9 Moderately correlated
98 ZNF12 1 99.0 Weakly correlated
99 ZNF133 1 99.0 Weakly correlated
100 ZNF135 1 94.0 Weakly correlated
101 ZNF157 1 99.0 Weakly correlated
102 ZNF175 1 94.0 Weakly correlated
103 ZNF182 1 99.0 Weakly correlated
104 ZNF197 1 99.0 Weakly correlated
105 ZNF202 1 160.0 Weakly correlated
106 ZNF211 1 94.0 Weakly correlated
107 ZNF222 1 43.0 Highly correlated
108 ZNF224 1 69.0 Weakly correlated
109 ZNF234 1 99.0 Weakly correlated
110 ZNF284 1 43.0 Highly correlated
111 ZNF287 1 99.0 Weakly correlated
112 ZNF347 1 43.0 Highly correlated
113 ZNF418 1 43.0 Highly correlated
114 ZNF430 1 19.6 Weakly correlated
115 ZNF433 1 43.0 Highly correlated
116 ZNF563 1 28.9 Moderately correlated
117 ZNF578 1 15.2 Weakly correlated
118 ZNF584 1 99.0 Weakly correlated
119 ZNF587 1 28.9 Moderately correlated
120 ZNF589 1 28.9 Moderately correlated
121 ZNF665 1 28.9 Moderately correlated
122 ZNF66 1 0.0 Weakly correlated
123 ZNF677 1 99.0 Weakly correlated
124 ZNF780A 1 43.0 Highly correlated
125 ZNF813 1 28.9 Moderately correlated
126 ZNF816 1 28.9 Moderately correlated
127 ZNF845 1 28.9 Moderately correlated
128 ZNF852 1 94.0 Weakly correlated
129 ZNF878 1 43.0 Highly correlated
130 ZNF8 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF585B 1244 99.0 Weakly correlated
2 ZNF675 1157 8.6 Weakly correlated
3 ZNF586 1145 43.0 Highly correlated
4 ZNF793 524 99.0 Weakly correlated
5 ZNF707 364 74.0 Weakly correlated
6 ZNF506 273 28.9 Moderately correlated
7 ZNF479 136 6.4 Weakly correlated
8 ZNF486 77 8.6 Weakly correlated
9 ZNF468 60 28.9 Moderately correlated
10 ZNF44 44 43.0 Highly correlated
11 ZNF550 44 94.0 Weakly correlated
12 ZNF75D 41 94.0 Weakly correlated
13 ZNF320 33 28.9 Moderately correlated
14 ZNF528 14 43.0 Highly correlated
15 ZNF490 14 43.0 Highly correlated
16 ZNF530 13 28.9 Moderately correlated
17 ZNF680 12 28.9 Moderately correlated
18 ZNF778 12 74.0 Weakly correlated
19 ZNF534 11 19.6 Weakly correlated
20 ZNF141 11 43.0 Highly correlated
21 ZNF28 10 28.9 Moderately correlated
22 ZNF682 9 28.9 Moderately correlated
23 ZNF735 7 28.9 Moderately correlated
24 ZIM3 7 87.0 Weakly correlated
25 ZNF317 7 99.0 Weakly correlated
26 ZFP57 7 87.0 Weakly correlated
27 ZNF549 6 87.0 Weakly correlated
28 ZNF263 5 180.0 Weakly correlated
29 ZNF560 5 43.0 Highly correlated
30 ZNF257 4 0.0 Weakly correlated
31 ZNF679 4 28.9 Moderately correlated
32 ZNF674 4 99.0 Weakly correlated
33 ZNF483 4 99.0 Weakly correlated
34 ZNF417 3 28.9 Moderately correlated
35 ZKSCAN1 3 160.0 Weakly correlated
36 ZNF189 3 99.0 Weakly correlated
37 ZNF485 3 94.0 Weakly correlated
38 ZNF789 2 99.0 Weakly correlated
39 ZNF124 2 43.0 Highly correlated
40 ZNF695 2 28.9 Moderately correlated
41 ZNF41 2 99.0 Weakly correlated
42 ZNF799 2 43.0 Highly correlated
43 ZNF382 2 99.0 Weakly correlated
44 ZNF766 2 43.0 Highly correlated
45 ZNF816 1 28.9 Moderately correlated
46 ZNF471 1 94.0 Weakly correlated
47 ZNF786 1 99.0 Weakly correlated
48 ZNF26 1 99.0 Weakly correlated
49 ZNF519 1 19.6 Weakly correlated
50 ZNF765 1 8.6 Weakly correlated
51 ZNF264 1 99.0 Weakly correlated
52 ZNF2 1 99.0 Weakly correlated
53 ZFP69B 1 99.0 Weakly correlated
54 ZNF100 1 28.9 Moderately correlated
55 ZNF101 1 43.0 Highly correlated
56 ZNF10 1 99.0 Weakly correlated
57 ZNF140 1 99.0 Weakly correlated
58 ZNF18 1 160.0 Weakly correlated
59 ZNF283 1 99.0 Weakly correlated
60 ZNF677 1 99.0 Weakly correlated
61 ZNF559 1 74.0 Weakly correlated
62 ZNF671 1 94.0 Weakly correlated
63 ZNF33A 1 99.0 Weakly correlated
64 ZNF429 1 28.9 Moderately correlated
65 ZNF587 1 28.9 Moderately correlated
66 ZNF610 1 28.9 Moderately correlated
67 ZNF723 1 15.2 Weakly correlated
68 ZNF845 1 28.9 Moderately correlated
69 ZNF251 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF486 8.6 Weakly correlated
2 ZNF534 19.6 Weakly correlated
3 ZNF75D 94.0 Weakly correlated