ZRdb KZFP & Repeats
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LTR_THE1A

  • Name
    THE1A
  • Repbase
    THE1A
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000005
Description :

The LTR of THE1A retrovirus-like MaLR element. Has 5bp TSDs. This entryshows ~90% full-length similarity to THE1B.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatatggtttggctgtgtccccacccaaatctcaacttgaattgtatctcccagaattcccacgtgttgtgggagggacccagggggaggtaattgaatcatgggggccggtctttcccgtgctattctcgtgatagtgaataagtctcacgagatctgatgggtttatcaggggtttccgcttttgcttcttcctcattttcctcttgccgccgccatgtaagaagtgcctttcgcctcccgccatgattctgaggcctccccagccatgtggaactgtaagtccaattaaacctctttttcttcccagtctcgggtatgtctttatcagcagcgtgaaaacggactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF100 2263 28.9 Moderately correlated
2 ZNF766 1044 43.0 Highly correlated
3 ZNF707 262 74.0 Weakly correlated
4 ZIM3 101 87.0 Weakly correlated
5 ZNF679 56 28.9 Moderately correlated
6 ZNF75D 44 94.0 Weakly correlated
7 ZNF430 39 19.6 Weakly correlated
8 ZNF28 35 28.9 Moderately correlated
9 ZNF382 32 99.0 Weakly correlated
10 ZNF251 31 94.0 Weakly correlated
11 ZFP57 31 87.0 Weakly correlated
12 ZNF18 31 160.0 Weakly correlated
13 ZNF680 29 28.9 Moderately correlated
14 ZNF257 25 0.0 Weakly correlated
15 ZNF175 24 94.0 Weakly correlated
16 ZNF589 23 28.9 Moderately correlated
17 ZNF534 22 19.6 Weakly correlated
18 ZNF479 19 6.4 Weakly correlated
19 ZNF485 18 94.0 Weakly correlated
20 ZNF793 16 99.0 Weakly correlated
21 ZNF418 13 43.0 Highly correlated
22 ZNF584 12 99.0 Weakly correlated
23 ZNF705B 12 28.9 Moderately correlated
24 ZNF705D 12 28.9 Moderately correlated
25 ZNF197 11 99.0 Weakly correlated
26 ZNF597 11 94.0 Weakly correlated
27 ZNF26 11 99.0 Weakly correlated
28 ZNF585B 10 99.0 Weakly correlated
29 ZNF320 9 28.9 Moderately correlated
30 ZNF723 9 15.2 Weakly correlated
31 ZNF486 7 8.6 Weakly correlated
32 ZNF490 7 43.0 Highly correlated
33 ZNF394 7 99.0 Weakly correlated
34 ZNF283 6 99.0 Weakly correlated
35 ZNF263 6 180.0 Weakly correlated
36 ZKSCAN8 6 160.0 Weakly correlated
37 ZNF506 6 28.9 Moderately correlated
38 ZNF317 5 99.0 Weakly correlated
39 ZNF44 5 43.0 Highly correlated
40 ZNF675 4 8.6 Weakly correlated
41 ZNF586 4 43.0 Highly correlated
42 ZNF528 4 43.0 Highly correlated
43 ZNF468 3 28.9 Moderately correlated
44 ZNF530 3 28.9 Moderately correlated
45 ZNF425 3 94.0 Weakly correlated
46 ZNF334 3 99.0 Weakly correlated
47 ZNF202 3 160.0 Weakly correlated
48 ZNF141 3 43.0 Highly correlated
49 ZNF92 3 28.9 Moderately correlated
50 PRDM9 3 0.0 Weakly correlated
51 ZNF554 2 99.0 Weakly correlated
52 ZNF610 2 28.9 Moderately correlated
53 ZNF700 2 28.9 Moderately correlated
54 ZNF547 2 74.0 Weakly correlated
55 ZNF735 2 28.9 Moderately correlated
56 ZNF778 2 74.0 Weakly correlated
57 ZFP37 2 99.0 Weakly correlated
58 ZNF248 2 99.0 Weakly correlated
59 ZNF274 2 99.0 Weakly correlated
60 ZFP69 2 99.0 Weakly correlated
61 ZNF324 2 99.0 Weakly correlated
62 ZNF133 2 99.0 Weakly correlated
63 ZNF765 1 8.6 Weakly correlated
64 ZNF225 1 74.0 Weakly correlated
65 ZNF182 1 99.0 Weakly correlated
66 ZNF160 1 74.0 Weakly correlated
67 ZNF140 1 99.0 Weakly correlated
68 ZNF727 1 19.6 Weakly correlated
69 ZNF136 1 74.0 Weakly correlated
70 ZNF264 1 99.0 Weakly correlated
71 ZNF101 1 43.0 Highly correlated
72 ZKSCAN1 1 160.0 Weakly correlated
73 ZNF808 1 19.6 Weakly correlated
74 ZNF84 1 99.0 Weakly correlated
75 ZNF85 1 28.9 Moderately correlated
76 ZNF878 1 43.0 Highly correlated
77 ZFP69B 1 99.0 Weakly correlated
78 ZNF519 1 19.6 Weakly correlated
79 ZNF273 1 28.9 Moderately correlated
80 ZNF677 1 99.0 Weakly correlated
81 ZNF671 1 94.0 Weakly correlated
82 ZNF641 1 99.0 Weakly correlated
83 ZNF611 1 19.6 Weakly correlated
84 ZNF2 1 99.0 Weakly correlated
85 ZNF605 1 99.0 Weakly correlated
86 ZNF333 1 99.0 Weakly correlated
87 ZNF337 1 43.0 Highly correlated
88 ZNF440 1 28.9 Moderately correlated
89 ZNF585A 1 99.0 Weakly correlated
90 ZNF445 1 99.0 Weakly correlated
91 ZNF558 1 99.0 Weakly correlated
92 ZNF454 1 99.0 Weakly correlated
93 ZNF480 1 43.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF100 1001 28.9 Moderately correlated
2 ZNF766 507 43.0 Highly correlated
3 ZIM3 65 87.0 Weakly correlated
4 ZNF430 38 19.6 Weakly correlated
5 ZNF257 18 0.0 Weakly correlated
6 ZNF75D 17 94.0 Weakly correlated
7 ZNF679 15 28.9 Moderately correlated
8 ZNF534 15 19.6 Weakly correlated
9 ZNF485 14 94.0 Weakly correlated
10 ZNF680 8 28.9 Moderately correlated
11 ZNF283 6 99.0 Weakly correlated
12 ZNF597 6 94.0 Weakly correlated
13 ZFP57 5 87.0 Weakly correlated
14 ZNF506 5 28.9 Moderately correlated
15 ZNF251 4 94.0 Weakly correlated
16 ZNF320 4 28.9 Moderately correlated
17 ZNF479 4 6.4 Weakly correlated
18 ZNF141 3 43.0 Highly correlated
19 ZNF528 3 43.0 Highly correlated
20 PRDM9 2 0.0 Weakly correlated
21 ZNF263 2 180.0 Weakly correlated
22 ZNF793 2 99.0 Weakly correlated
23 ZNF44 2 43.0 Highly correlated
24 ZNF202 1 160.0 Weakly correlated
25 ZNF589 1 28.9 Moderately correlated
26 ZNF28 1 28.9 Moderately correlated
27 ZFP69 1 99.0 Weakly correlated
28 ZNF586 1 43.0 Highly correlated
29 ZNF723 1 15.2 Weakly correlated
30 ZNF585B 1 99.0 Weakly correlated
31 ZNF18 1 160.0 Weakly correlated
32 ZNF468 1 28.9 Moderately correlated
33 ZNF317 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Weakly correlated
2 ZNF100 28.9 Moderately correlated
3 ZNF257 0.0 Weakly correlated
4 ZNF485 94.0 Weakly correlated
5 ZNF534 19.6 Weakly correlated
6 ZNF597 94.0 Weakly correlated
7 ZNF679 28.9 Moderately correlated
8 ZNF75D 94.0 Weakly correlated