ZRdb KZFP & Repeats
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LTR_THE1-INT

  • Name
    THE1-INT
  • Repbase
    THE1_I
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000817
Description :

THE1B is a MaLR-like endogenous retrovirus element.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gtaaattggtaccagtagagtggggcgctgctgaaaagatacccgaaaatgtggaagcgactttggaactgggtaacaggcagaggttggaacagtttggagggctcagaagaagacaggaaaatgtgggaaagtttggaacttcctagagacttgttgaatggctttgaccaaaatgctgatagtgatatggacaataaagtccaggctgaggtggtctcagatggagatgaggaacttgttgggaactggagcaaaggtgactcttgttatgttttagcaaagagactggcggcattttgcccctgccctagagatttgtggaactttgaacttgagagagatgatttagggtatctggcggaagaaatttctaagcagcaaagcattcaagaggtgacttgggtgctgttaaaggcattcagttttanaagggaagcagagcataaaagttcggaaaatttgcagcctgacgatgcgatagaaaagaaaancccattttctgaggagaaattcaagccggctgcagaaatttgcataagtaacgaggagccgaatgttaatccccaagacaatggggaaaatgtctccagggcatgtcagaggccttcgcggcagcccctcccatcacaggcccggaggcctaggaggaaaaaatggtttcgtgggccgggcccagggtccccgtgctgtgtgcagcctagggacttggtgccctgcgtcccagccgctccagccgtggctgaaaggggccaacgtacagctcgggccgtggcttcagagggtgcaagccccaagccttggcagcttccacgtggtgttgagcctgcgggtgcacagaagtcaagaattgaggtttgggaacctccgcctagatttcagaggatgtatggaaacgcctggatgcccaggcagaagtttgctgcaggggcggggccctcatggagaacctctgctagggcagtgcggaagggaaatgtggggtcggagcccccacacagagtccctactggggcaccgcctagtggagctgtgagaagagggccaccgtcctccagaccccagaatggtagatccaccgacagcttgcaccgtgcgcctggaaaagccgcagacactcaacgccagcccgtgaaagcagccgggagggaggctgtaccctgcaaagccacaggggcggagctgcccaagaccatgggaacccacctcttgcatcagcgtgacctggatgtgagacatggagtcaaaggagatcattttggagctttaagatttgactgccccgctggatttcggacttgcatggggcctgtagcccctttgttttggccaatttctcccatttggaatggctgtatttacccaatgcctgtacccccattgtatctaggaagtaactaacttgcttttgattttacaggctcataggcggaagggacttgccttgtctcagatgagactttggactgtggacttttgagttaatgctgaaatgagttaagactttgggggactgttgggaaggcatgattggttttgaaatgtgaggacatgagatttgggaggggccaggggcggaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF585B 51 99.0 Weakly correlated
2 ZNF486 33 8.6 Weakly correlated
3 ZNF586 27 43.0 Highly correlated
4 ZNF675 26 8.6 Weakly correlated
5 ZNF793 13 99.0 Weakly correlated
6 ZNF679 7 28.9 Moderately correlated
7 ZNF707 7 74.0 Weakly correlated
8 ZNF479 6 6.4 Weakly correlated
9 ZNF506 4 28.9 Moderately correlated
10 ZNF765 4 8.6 Weakly correlated
11 ZNF75D 3 94.0 Weakly correlated
12 ZNF382 3 99.0 Weakly correlated
13 ZNF28 3 28.9 Moderately correlated
14 ZNF429 2 28.9 Moderately correlated
15 ZNF320 2 28.9 Moderately correlated
16 ZNF778 2 74.0 Weakly correlated
17 ZNF528 2 43.0 Highly correlated
18 ZNF550 2 94.0 Weakly correlated
19 ZNF705B 1 28.9 Moderately correlated
20 ZNF680 1 28.9 Moderately correlated
21 ZNF701 1 28.9 Moderately correlated
22 ZNF816 1 28.9 Moderately correlated
23 ZNF766 1 43.0 Highly correlated
24 ZNF141 1 43.0 Highly correlated
25 ZNF534 1 19.6 Weakly correlated
26 ZNF483 1 99.0 Weakly correlated
27 ZNF468 1 28.9 Moderately correlated
28 ZNF44 1 43.0 Highly correlated
29 ZNF425 1 94.0 Weakly correlated
30 ZNF334 1 99.0 Weakly correlated
31 ZNF317 1 99.0 Weakly correlated
32 ZNF274 1 99.0 Weakly correlated
33 ZNF273 1 28.9 Moderately correlated
34 ZNF230 1 28.9 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF585B 24 99.0 Weakly correlated
2 ZNF586 24 43.0 Highly correlated
3 ZNF675 23 8.6 Weakly correlated
4 ZNF793 5 99.0 Weakly correlated
5 ZNF506 4 28.9 Moderately correlated
6 ZNF707 3 74.0 Weakly correlated
7 ZNF320 2 28.9 Moderately correlated
8 ZNF479 2 6.4 Weakly correlated
9 ZNF486 2 8.6 Weakly correlated
10 ZNF75D 2 94.0 Weakly correlated
11 ZNF273 1 28.9 Moderately correlated
12 ZNF528 1 43.0 Highly correlated
13 ZNF550 1 94.0 Weakly correlated
14 ZNF468 1 28.9 Moderately correlated
15 ZNF28 1 28.9 Moderately correlated
16 ZNF44 1 43.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF585B 99.0 Weakly correlated