ZRdb KZFP & Repeats
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Retroposon_SVA_D

  • Name
    SVA_D
  • Repbase
    SVA_D
  • Type
    Retroposon
  • Emergence
    15.2 Mya
  • Dfam Id
    DF0001070
Description :

SVA retroelements are hominid-specific chimeras, some of which are stillactive in the human population. These SINEs are a unique combination offeatures. The 5' end begins with hexamer repeats, followed by two Alusin reverse orientation. The center is comprised of a number of VNTRregions (Variable Number of Tandem Repeats) that may span a few hundredbasepairs, up to 2000bp. The 3' end is formed by a portion of a HERVKLTR (the SINE-R feature) .
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
ctctccctctccctctccctctccctctccctctccctctccctctcccctctttccacggtctccctctgatgccgagccgaagctggactgtactgctgccatctcggctcactgcaacctccctgcctgattctcctgcctcagcctgccgagtgcctgcgattgcaggcgcgcgccgccacgcctgactggttttcgtatttttttggtggagacggggtttcgctgtgttggccgggctggtctccagctcctaaccgcgagtgatccgccagcctcggcctcccgaggtgccgggattgcagacggagtctcgttcactcagtgctcaatggtgcccaggctggagtgcagtggcgtgatctcggctcgctacaacctccacctcccagccgcctgccttggcctcccaaagtgccgagattgcagcctctgcccggccgccaccccgtctgggaagtgaggagcgtctctgcccggccgcccatcgtctgggatgtgaggagcccctctgcccggccgcccagtctgggaagtgaggagcgcctctgcccggccgccatcccgtctaggaagtgaggagcgtctctgcccggccgcccatcgtctgagatgtggggagcgcctctgccccgccgccccgtctgggatgtgaggagcgcctctgcccggccagccgccccgtccgggaggtgggggggtcagccccccgcccggccagccgccccgtccgggaggaggtgggggggtcagccccccgcccggccagccgccccgtccgggaggtgaggggcgcctctgcccggccgcccctactgggaagtgaggagcccctctgcccggccaccaccccgtctgggaggtgtacccaacagctcattgagaacgggccatgatgacaatggcggttttgtggaatagaaaggggggaaaggtggggaaaagattgagaaatcggatggttgccgtgtctgtgtagaaagaagtagacatgggagacttttcattttgttctgtactaagaaaaattcttctgccttgggatcctgttgatctgtgaccttacccccaaccctgtgctctctgaaacatgtgctgtgtccactcagggttaaatggattaagggcggtgcaagatgtgctttgttaaacagatgcttgaaggcagcatgctcgttaagagtcatcaccactccctaatctcaagtacccagggacacaaacactgcggaaggccgcagggtcctctgcctaggaaaaccagagacctttgttcacttgtttatctgctgaccttccctccactattgtcctatgaccctgccaaatccccctctgcgagaaacacccaagaatgatcaataaaaaaaaaaaaaaaaaaaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF705B 1537 28.9 Weakly correlated
2 ZNF91 1418 6.0 Moderately correlated
3 ZNF705D 943 28.9 Weakly correlated
4 ZNF611 764 19.6 Weakly correlated
5 ZNF560 235 43.0 Weakly correlated
6 ZNF28 186 28.9 Weakly correlated
7 ZNF461 160 99.0 Weakly correlated
8 ZNF282 143 319.0 Weakly correlated
9 ZFP57 123 87.0 Weakly correlated
10 ZNF202 111 160.0 Weakly correlated
11 ZNF705E 92 0.0 Weakly correlated
12 ZNF394 76 99.0 Weakly correlated
13 ZNF649 54 28.9 Weakly correlated
14 ZNF347 43 43.0 Weakly correlated
15 ZNF382 42 99.0 Weakly correlated
16 ZNF641 40 99.0 Weakly correlated
17 ZNF763 39 15.2 Highly correlated
18 ZNF780A 34 43.0 Weakly correlated
19 ZKSCAN5 32 160.0 Weakly correlated
20 ZNF263 32 180.0 Weakly correlated
21 ZNF558 31 99.0 Weakly correlated
22 ZNF101 30 43.0 Weakly correlated
23 ZNF468 30 28.9 Weakly correlated
24 ZNF257 27 0.0 Weakly correlated
25 ZNF334 25 99.0 Weakly correlated
26 ZNF534 24 19.6 Weakly correlated
27 ZNF169 23 94.0 Weakly correlated
28 ZNF141 19 43.0 Weakly correlated
29 ZNF605 18 99.0 Weakly correlated
30 ZNF610 18 28.9 Weakly correlated
31 ZNF519 17 19.6 Weakly correlated
32 ZNF140 16 99.0 Weakly correlated
33 ZNF18 16 160.0 Weakly correlated
34 ZNF253 15 19.6 Weakly correlated
35 ZNF500 15 160.0 Weakly correlated
36 ZNF766 13 43.0 Weakly correlated
37 ZNF878 13 43.0 Weakly correlated
38 ZNF2 12 99.0 Weakly correlated
39 ZNF528 12 43.0 Weakly correlated
40 ZNF607 12 43.0 Weakly correlated
41 ZFP37 11 99.0 Weakly correlated
42 ZNF735 10 28.9 Weakly correlated
43 ZNF747 10 43.0 Weakly correlated
44 ZNF324 9 99.0 Weakly correlated
45 ZNF589 9 28.9 Weakly correlated
46 ZNF680 9 28.9 Weakly correlated
47 ZNF136 8 74.0 Weakly correlated
48 ZNF234 8 99.0 Weakly correlated
49 ZNF624 8 99.0 Weakly correlated
50 ZNF679 8 28.9 Weakly correlated
51 ZNF14 7 69.0 Weakly correlated
52 ZNF182 7 99.0 Weakly correlated
53 ZNF175 6 94.0 Weakly correlated
54 ZNF510 6 99.0 Weakly correlated
55 ZNF573 6 94.0 Weakly correlated
56 ZFP69B 5 99.0 Weakly correlated
57 ZNF264 5 99.0 Weakly correlated
58 ZNF66 5 0.0 Weakly correlated
59 ZNF813 5 28.9 Weakly correlated
60 ZNF823 5 43.0 Weakly correlated
61 ZIM3 4 87.0 Weakly correlated
62 ZKSCAN1 4 160.0 Weakly correlated
63 ZNF302 4 43.0 Weakly correlated
64 ZNF317 4 99.0 Weakly correlated
65 ZNF675 4 8.6 Moderately correlated
66 ZNF699 4 99.0 Weakly correlated
67 ZNF726 4 28.9 Weakly correlated
68 ZNF730 4 19.6 Weakly correlated
69 ZNF251 3 94.0 Weakly correlated
70 ZNF286A 3 160.0 Weakly correlated
71 ZNF441 3 43.0 Weakly correlated
72 ZNF479 3 6.4 Moderately correlated
73 ZNF530 3 28.9 Weakly correlated
74 ZNF559 3 74.0 Weakly correlated
75 ZNF587B 3 8.6 Moderately correlated
76 ZNF695 3 28.9 Weakly correlated
77 ZNF718 3 19.6 Weakly correlated
78 ZNF723 3 15.2 Highly correlated
79 ZNF786 3 99.0 Weakly correlated
80 ZNF793 3 99.0 Weakly correlated
81 ZNF84 3 99.0 Weakly correlated
82 ZNF92 3 28.9 Weakly correlated
83 ZNF100 2 28.9 Weakly correlated
84 ZNF124 2 43.0 Weakly correlated
85 ZNF157 2 99.0 Weakly correlated
86 ZNF160 2 74.0 Weakly correlated
87 ZNF197 2 99.0 Weakly correlated
88 ZNF230 2 28.9 Weakly correlated
89 ZNF30 2 94.0 Weakly correlated
90 ZNF320 2 28.9 Weakly correlated
91 ZNF33A 2 99.0 Weakly correlated
92 ZNF483 2 99.0 Weakly correlated
93 ZNF485 2 94.0 Weakly correlated
94 ZNF486 2 8.6 Moderately correlated
95 ZNF549 2 87.0 Weakly correlated
96 ZNF583 2 99.0 Weakly correlated
97 ZNF75D 2 94.0 Weakly correlated
98 ZNF792 2 94.0 Weakly correlated
99 ZNF8 2 99.0 Weakly correlated
100 ZFP28 1 99.0 Weakly correlated
101 ZKSCAN8 1 160.0 Weakly correlated
102 ZNF154 1 94.0 Weakly correlated
103 ZNF177 1 94.0 Weakly correlated
104 ZNF17 1 69.0 Weakly correlated
105 ZNF180 1 99.0 Weakly correlated
106 ZNF221 1 74.0 Weakly correlated
107 ZNF227 1 99.0 Weakly correlated
108 ZNF229 1 99.0 Weakly correlated
109 ZNF287 1 99.0 Weakly correlated
110 ZNF300 1 99.0 Weakly correlated
111 ZNF304 1 99.0 Weakly correlated
112 ZNF311 1 99.0 Weakly correlated
113 ZNF420 1 94.0 Weakly correlated
114 ZNF445 1 99.0 Weakly correlated
115 ZNF471 1 94.0 Weakly correlated
116 ZNF473 1 43.0 Weakly correlated
117 ZNF490 1 43.0 Weakly correlated
118 ZNF506 1 28.9 Weakly correlated
119 ZNF514 1 94.0 Weakly correlated
120 ZNF547 1 74.0 Weakly correlated
121 ZNF551 1 94.0 Weakly correlated
122 ZNF569 1 99.0 Weakly correlated
123 ZNF584 1 99.0 Weakly correlated
124 ZNF585A 1 99.0 Weakly correlated
125 ZNF585B 1 99.0 Weakly correlated
126 ZNF674 1 99.0 Weakly correlated
127 ZNF677 1 99.0 Weakly correlated
128 ZNF701 1 28.9 Weakly correlated
129 ZNF717 1 0.0 Weakly correlated
130 ZNF761 1 19.6 Weakly correlated
131 ZNF77 1 87.0 Weakly correlated
132 ZNF805 1 99.0 Weakly correlated
133 ZNF808 1 19.6 Weakly correlated
134 ZNF829 1 99.0 Weakly correlated
135 ZNF846 1 74.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF91 1077 6.0 Moderately correlated
2 ZNF611 738 19.6 Weakly correlated
3 ZNF705D 480 28.9 Weakly correlated
4 ZNF705B 422 28.9 Weakly correlated
5 ZNF28 163 28.9 Weakly correlated
6 ZNF461 161 99.0 Weakly correlated
7 ZNF282 89 319.0 Weakly correlated
8 ZNF202 37 160.0 Weakly correlated
9 ZNF560 37 43.0 Weakly correlated
10 ZKSCAN5 32 160.0 Weakly correlated
11 ZNF347 31 43.0 Weakly correlated
12 ZNF780A 28 43.0 Weakly correlated
13 ZNF101 26 43.0 Weakly correlated
14 ZNF468 23 28.9 Weakly correlated
15 ZNF334 22 99.0 Weakly correlated
16 ZNF140 15 99.0 Weakly correlated
17 ZNF141 13 43.0 Weakly correlated
18 ZNF169 12 94.0 Weakly correlated
19 ZNF610 10 28.9 Weakly correlated
20 ZNF257 7 0.0 Weakly correlated
21 ZNF18 7 160.0 Weakly correlated
22 ZNF394 6 99.0 Weakly correlated
23 ZNF823 5 43.0 Weakly correlated
24 ZNF263 5 180.0 Weakly correlated
25 ZNF264 4 99.0 Weakly correlated
26 ZNF793 3 99.0 Weakly correlated
27 ZNF519 2 19.6 Weakly correlated
28 ZNF320 2 28.9 Weakly correlated
29 ZNF534 2 19.6 Weakly correlated
30 ZNF445 1 99.0 Weakly correlated
31 ZNF528 1 43.0 Weakly correlated
32 ZNF549 1 87.0 Weakly correlated
33 ZNF677 1 99.0 Weakly correlated
34 ZNF530 1 28.9 Weakly correlated
35 ZNF154 1 94.0 Weakly correlated
36 ZNF14 1 69.0 Weakly correlated
37 ZNF485 1 94.0 Weakly correlated
38 ZNF479 1 6.4 Moderately correlated
39 ZNF558 1 99.0 Weakly correlated
40 ZNF695 1 28.9 Weakly correlated
41 ZNF75D 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZKSCAN5 160.0 Weakly correlated
2 ZNF141 43.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF202 160.0 Weakly correlated
5 ZNF257 0.0 Weakly correlated
6 ZNF282 319.0 Weakly correlated
7 ZNF28 28.9 Weakly correlated
8 ZNF347 43.0 Weakly correlated
9 ZNF560 43.0 Weakly correlated
10 ZNF610 28.9 Weakly correlated
11 ZNF611 19.6 Weakly correlated
12 ZNF705D 28.9 Weakly correlated