ZRdb KZFP & Repeats
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LINE_PLAT_L3

  • Name
    PLAT_L3
  • Repbase
    Plat_L3
  • Type
    LINE
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001135
Description :

Plat_L3 belongs to the CR1 clade of LINE retrotransposons present inmammals, marsupials, birds, reptiles, fishes and insects.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gaaggaggcggnttgncctctcaggagggaggaacaaagaaacgnagggacttcgatnctcaggaaanaaaaggaggcggtggntgtcgntgntnntcatgggtngnggcgnnatccgacgggccagatacagagtcccgggaggtgtgntgcctgncgagaactcaggtctgagncgccacgaagngattggacggactcatcnggcccgacgactnctgccccgtgcttcttatccatgtgggaacgaatgatactgcccggtctcacccggagcntatcaggagtgactgcagggctctgggagcgagggtgaaggaggcgggggctcaggtggtgttctcgtcgatcctcccagtcgaggggaaaggctcccgcagggacagacgcatcctggagatgaacgcctggctgcgcgactggtgtcgaagagaatgcttcggattcctcgacaacggtgtgatcttcagggaagagggcctcctgagccgggacgggatccatctcgcgaagaaagggaagagtatcttcgggagcagaccggctaacctagtgaggagggctttaaactaggtttggcggggatggatcnactaagcccaaaggtaagtgaaatttncattgatctggggggaggcctgaactctagaatagacttgggaaattctagcgtgggtgacaaggtaacaaggaggaaaacagaagggacaacccatggctacttgaaatgtttgtacgcaaatgcaaggagcatgggaaataaacaggaggaactggaggtcttagctcaggaccacagttatgatgtaactggaataactgagacgtggtgggacagcactcatgactggagtgctggactagaagggtatcggttgttcaggaaagataggcagggaaaaaagggaggtggtgttgccttgtacatcaaggatanctacacatgctcagaggcccaggaaacagaaggaggccaacaggtagagagtgtctgggttaaagcgaaaggtgaaaagaataagggcgacgtcatggtaggagtctattatagacctccaaaccaggaagagaaggtggatgaggccttctttggtcaactcaccaaagcggcttcgggtcaggatctggtggtgatgggagactttaactacccagatatctgctggaaaagcaattcagcgggccacagatcgtcaaacaggtttttggattgcattggggacaatttcctagtgcagaaagtagaggaatcaactagggcagatgcccttcttgatttgattcttactaacggggaagaattagtcgaggatctaaaggtggatggaaaccttggtggaagcgatcacaagatgatcgtattcaagatcctaagggaagggaggagagaagtcagcaagataaagaaaatgaactttaggaaagcaaattttaacaggcttagggcactagtaggaaggacccgatggaaggaaagcctaagaggcaaaggagtccaagaaagctggctgttcttcaaaaagacagttctgcaggctcaggaacaaactataccagtgcanaggaaggacaagaagggtaacaagatgccaagttggctaaacccagaactctncagagacctgaagggcaaatgggaaagctacaaaaagtggaaattaggccagatcactaaagaagagtataaagaaatagcacgattgtgtagggacaagattagaaaagcnaaagccggaaaggagatgcaactagcacgagacataaaaggtaacaaaaaaacattcttcaattatattaggcaaaagaggaggaccagggaaaatgtcgctcccccggtagacaggaagggaaagctgataacagatgactgtgaaaaggcggaggcttttanattttttttcacttctgtctttacgaaaaagatcaaatgtgaacagctgaccagggcaagtcccacttgngatggaaggttggaaagccaaactagaatagggaaagaaacagttaaagagtatctnaaaaaaccggatgtatttaaatcagcagggcctgatgacatgcatcctagggtacttaaggaattggcggatgttattgcagagccactagctattatttttgagaactcgcggaggacgggagaagtccctgaggattggaaaagggcaaacgttgtgcccatctttaaaaaagggaaaaaggacgaccctggtaattacagaccggtcagcttaacatcgatacctgggaagatactagaacaaatcatcaaacaatcaatttgcaaccacctagaagagcataagatactaggaagcaaccaacgtggctttgtgaagagcaaatcgtgccagacnaatttaatttccttctatgatagagtgacaggccacgtagacaagggggaagcaatagatgtaatctatctagacttcagtaaggcttttgattccgtcccacatgacatcctcatcgacaagctgggaaagtatggtcttgaccatactaccgttaggtgggtgcacagctggctcgagggtcgcacccaaagggtagtcatcaatggctcggtgtcaacctggaggganatatcgagtggtgtcccacagggatcggtcctgggaccggttctattcaatatctttatcgatgacctggacgaaggaatcgagagcatgctcatcaaatttgcagatgatactaaattgggcggggttgctaacactttggaagacaggaataaaattcaaagtgacctngacaaattggaaaaatggtcctncaaaaacaggatgaaattcaatagggacaagtgcaaggtagtgcacttagggacgaaaaacaaaccgcacaaatacaggatggggaaagactggctaggcacaagtacagcagaaaaagacctgggggtcatagtcgaccanaagctgaatatgagtcagcaatgtagtgccgttattaaaaaagccaacgtggtactgggatgtattaacaggagtatgacatgcaagagtcgggaagtaatccttccgctatactctgcactggtcagacccttattagagtactgtgtccagttttggtcaccgcactttaaaaaggatgtggagaaactggagagggtccagagaagagcgacaaaaatgattaaagggatggaaaataggtcctatgaggaaaggttaaaggaattggggttgtttagcctggagaagagaaggctaaggggtgacttaataactgtcttcaagtatatgaagggtttttatggggaggacgctgaccagttgttctccatgtccacngaggaccgaacaagaggaaatgggcttaaattaaagcaggagagatttcggttggacataaggaagaacttcttgactgtcagggtgataaaacactggaacgggctaccgagggaggttgtggagtctccatccctggagatctttaagaaaagaatagacanccatctgtcctggatggtttagtcattcacctgcctggaggcagggggctggaccagatgacctctcgaggtcccttccagctctangattctatgattctacg
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 185 99.0 Highly correlated
2 ZNF766 82 43.0 Weakly correlated
3 ZNF394 63 99.0 Highly correlated
4 ZFP37 57 99.0 Highly correlated
5 ZNF263 41 180.0 Weakly correlated
6 ZNF2 40 99.0 Highly correlated
7 ZNF589 40 28.9 Weakly correlated
8 ZKSCAN1 38 160.0 Weakly correlated
9 ZNF92 36 28.9 Weakly correlated
10 ZNF175 27 94.0 Moderately correlated
11 ZKSCAN8 25 160.0 Weakly correlated
12 ZFP69B 24 99.0 Highly correlated
13 ZNF18 23 160.0 Weakly correlated
14 ZIM3 22 87.0 Moderately correlated
15 ZNF324 22 99.0 Highly correlated
16 ZNF584 20 99.0 Highly correlated
17 ZNF558 20 99.0 Highly correlated
18 ZNF554 20 99.0 Highly correlated
19 ZNF101 19 43.0 Weakly correlated
20 ZNF534 19 19.6 Weakly correlated
21 ZNF317 19 99.0 Highly correlated
22 ZNF610 17 28.9 Weakly correlated
23 ZNF197 16 99.0 Highly correlated
24 ZNF723 15 15.2 Weakly correlated
25 ZNF705B 14 28.9 Weakly correlated
26 ZNF701 12 28.9 Weakly correlated
27 ZNF597 11 94.0 Moderately correlated
28 ZNF679 11 28.9 Weakly correlated
29 ZNF680 9 28.9 Weakly correlated
30 ZNF528 8 43.0 Weakly correlated
31 ZNF479 8 6.4 Weakly correlated
32 ZNF274 8 99.0 Highly correlated
33 ZNF257 8 0.0 Weakly correlated
34 ZNF705D 7 28.9 Weakly correlated
35 ZNF485 7 94.0 Moderately correlated
36 ZNF75D 6 94.0 Moderately correlated
37 ZNF264 5 99.0 Highly correlated
38 ZNF251 5 94.0 Moderately correlated
39 ZNF695 4 28.9 Weakly correlated
40 ZNF549 4 87.0 Moderately correlated
41 ZNF547 4 74.0 Weakly correlated
42 ZNF585B 3 99.0 Highly correlated
43 ZNF585A 3 99.0 Highly correlated
44 ZNF716 3 19.6 Weakly correlated
45 ZNF792 3 94.0 Moderately correlated
46 ZNF93 2 8.6 Weakly correlated
47 ZFP28 2 99.0 Highly correlated
48 ZNF793 2 99.0 Highly correlated
49 ZNF573 2 94.0 Moderately correlated
50 ZNF675 2 8.6 Weakly correlated
51 ZNF433 2 43.0 Weakly correlated
52 ZNF230 2 28.9 Weakly correlated
53 ZNF224 2 69.0 Weakly correlated
54 ZNF28 2 28.9 Weakly correlated
55 ZNF506 2 28.9 Weakly correlated
56 ZNF331 2 94.0 Moderately correlated
57 ZNF169 2 94.0 Moderately correlated
58 ZNF429 2 28.9 Weakly correlated
59 ZNF140 2 99.0 Highly correlated
60 ZNF486 2 8.6 Weakly correlated
61 ZNF471 2 94.0 Moderately correlated
62 ZNF735 1 28.9 Weakly correlated
63 ZFP57 1 87.0 Moderately correlated
64 ZFP69 1 99.0 Highly correlated
65 ZNF202 1 160.0 Weakly correlated
66 ZNF91 1 6.0 Weakly correlated
67 ZNF878 1 43.0 Weakly correlated
68 ZNF707 1 74.0 Weakly correlated
69 ZNF17 1 69.0 Weakly correlated
70 ZNF133 1 99.0 Highly correlated
71 ZNF75A 1 94.0 Moderately correlated
72 ZNF141 1 43.0 Weakly correlated
73 ZNF823 1 43.0 Weakly correlated
74 ZNF677 1 99.0 Highly correlated
75 ZKSCAN5 1 160.0 Weakly correlated
76 ZNF776 1 43.0 Weakly correlated
77 ZNF777 1 319.0 Weakly correlated
78 ZNF778 1 74.0 Weakly correlated
79 ZNF568 1 99.0 Highly correlated
80 ZNF510 1 99.0 Highly correlated
81 ZNF519 1 19.6 Weakly correlated
82 ZNF490 1 43.0 Weakly correlated
83 ZNF480 1 43.0 Weakly correlated
84 ZNF468 1 28.9 Weakly correlated
85 ZNF441 1 43.0 Weakly correlated
86 ZNF560 1 43.0 Weakly correlated
87 ZNF563 1 28.9 Weakly correlated
88 ZNF565 1 99.0 Highly correlated
89 ZNF283 1 99.0 Highly correlated
90 ZNF436 1 180.0 Weakly correlated
91 ZNF425 1 94.0 Moderately correlated
92 ZNF41 1 99.0 Highly correlated
93 ZNF419 1 28.9 Weakly correlated
94 ZNF350 1 99.0 Highly correlated
95 ZNF616 1 43.0 Weakly correlated
96 ZNF641 1 99.0 Highly correlated
97 ZNF287 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 7 87.0 Moderately correlated
2 ZNF534 7 19.6 Weakly correlated
3 ZNF263 6 180.0 Weakly correlated
4 ZNF479 6 6.4 Weakly correlated
5 ZNF766 4 43.0 Weakly correlated
6 ZNF485 4 94.0 Moderately correlated
7 ZFP37 4 99.0 Highly correlated
8 ZNF175 4 94.0 Moderately correlated
9 ZNF589 3 28.9 Weakly correlated
10 ZNF197 3 99.0 Highly correlated
11 ZNF723 3 15.2 Weakly correlated
12 ZNF680 3 28.9 Weakly correlated
13 ZNF18 2 160.0 Weakly correlated
14 ZNF558 2 99.0 Highly correlated
15 ZNF705B 2 28.9 Weakly correlated
16 ZNF554 2 99.0 Highly correlated
17 ZNF169 2 94.0 Moderately correlated
18 ZNF257 2 0.0 Weakly correlated
19 ZNF101 2 43.0 Weakly correlated
20 ZFP28 1 99.0 Highly correlated
21 ZNF251 1 94.0 Moderately correlated
22 ZNF433 1 43.0 Weakly correlated
23 ZNF41 1 99.0 Highly correlated
24 ZNF584 1 99.0 Highly correlated
25 ZNF429 1 28.9 Weakly correlated
26 ZNF823 1 43.0 Weakly correlated
27 ZNF585A 1 99.0 Highly correlated
28 ZNF695 1 28.9 Weakly correlated
29 ZNF565 1 99.0 Highly correlated
30 ZNF324 1 99.0 Highly correlated
31 ZNF382 1 99.0 Highly correlated
32 ZNF264 1 99.0 Highly correlated
33 ZNF675 1 8.6 Weakly correlated
34 ZNF283 1 99.0 Highly correlated
35 ZNF224 1 69.0 Weakly correlated
36 ZNF75D 1 94.0 Moderately correlated
37 ZNF679 1 28.9 Weakly correlated
38 ZNF528 1 43.0 Weakly correlated
39 ZNF573 1 94.0 Moderately correlated
40 ZFP69 1 99.0 Highly correlated
41 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF479 6.4 Weakly correlated