ZRdb KZFP & Repeats
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LINE_PENELOPE1_VERT

  • Name
    PENELOPE1_VERT
  • Repbase
    No find
  • Type
    LINE
  • Emergence
    319.0 Mya
  • Dfam Id
    DF0001208
Description :

Part of the 3'end of a Penelope probably active some 350 million yearsago. Conserved copies found in Xenopus, alligator, turtle, chicken,platypus, and our boreoeutherian ancestor. The ORF from pos 2-946encodes a protein similar the end of Neptune1_Nv_pol. The last 130 bpare likely to be a terminal direct repeat, though the other end is notyet defined. Part of the coding region (current pos 182-463) wasoriginally named UCON13 as it appeared in a number of ultraconservedregions.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tcccatttctgactagcaacaacgttatcgaaactgatctttacagcaaacccacggatgnacacctgtatttgaatcggacatcttgtcatcccagacataccaaaatcagcattgtttacagccttgctcttaggattcgacgtatctgcaataatgaagaaaactactggaaaaaaattaaagaacttactaatcagtttgttaatcgaggatatccgcttcacattatacagagacaaattaagaaggctactgtggtacccagaaancatctgctaaacaaagtcaaaattaatgataaacaaaatcgagttccctttgtggttgattttcatccagctgcacccaactataaaagagctatcaaagaaagctacccattagttgtcaattcagaacgacttcagaaagcaatccctaaacctccantgatatctttccgacaacctcctaatctccgcaagttgttggtaagagctgcattaaaccagcctgtcatcaatcctggctctcaccgctgtaactcaaagagatgcactacctgcgatcacttagaagaaactacagcttttaaaagcacatctacaggtagaacttacaatatacaacagaatctcacttgcagatctacctctgtcatctacgtcatacagtgtcaacggcccgactgcaataaacaatacgcaggcaaaaccagcagtgacctacgtacgtatttcagaaatcgcaagtctgctatcattactaagaagctggaccaacctgtggctaaacacttcagcactccagaccacagccttgctgatctcaggattttcccaatagaaagtgtatcaaaacctgaagatctggataaaagaaaaaacttctggacgcagaggcttaaaactctagctccctgtggtttaaacctggaagacaatacatctgtttaacatcttgcagtttctggaattctcattgagaatntttctgacacagtgttccatggaacatcctttgtttgctcacactgtgcctcttttaaacttcagatgtaaacaacaaaagcttattctttttccatactatcttca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 53 99.0 Weakly correlated
2 ZNF394 15 99.0 Weakly correlated
3 ZNF263 15 180.0 Weakly correlated
4 ZNF2 14 99.0 Weakly correlated
5 ZNF766 11 43.0 Weakly correlated
6 ZFP37 10 99.0 Weakly correlated
7 ZNF175 9 94.0 Weakly correlated
8 ZNF101 8 43.0 Weakly correlated
9 ZNF589 8 28.9 Weakly correlated
10 ZIM3 7 87.0 Weakly correlated
11 ZNF324 7 99.0 Weakly correlated
12 ZFP69B 6 99.0 Weakly correlated
13 ZNF584 6 99.0 Weakly correlated
14 ZKSCAN8 5 160.0 Weakly correlated
15 ZNF317 5 99.0 Weakly correlated
16 ZNF701 4 28.9 Weakly correlated
17 ZNF597 4 94.0 Weakly correlated
18 ZNF75D 4 94.0 Weakly correlated
19 ZKSCAN1 4 160.0 Weakly correlated
20 ZNF610 3 28.9 Weakly correlated
21 ZNF558 3 99.0 Weakly correlated
22 ZNF679 3 28.9 Weakly correlated
23 ZNF554 3 99.0 Weakly correlated
24 ZNF705B 3 28.9 Weakly correlated
25 ZNF251 3 94.0 Weakly correlated
26 ZNF197 3 99.0 Weakly correlated
27 ZNF705D 2 28.9 Weakly correlated
28 ZNF723 2 15.2 Weakly correlated
29 ZNF816 2 28.9 Weakly correlated
30 ZNF528 2 43.0 Weakly correlated
31 ZNF479 2 6.4 Weakly correlated
32 ZNF18 2 160.0 Weakly correlated
33 ZNF257 2 0.0 Weakly correlated
34 ZNF282 2 319.0 Highly correlated
35 ZNF92 1 28.9 Weakly correlated
36 ZNF540 1 87.0 Weakly correlated
37 ZNF169 1 94.0 Weakly correlated
38 ZNF793 1 99.0 Weakly correlated
39 ZNF792 1 94.0 Weakly correlated
40 ZNF77 1 87.0 Weakly correlated
41 ZNF202 1 160.0 Weakly correlated
42 ZNF735 1 28.9 Weakly correlated
43 ZNF716 1 19.6 Weakly correlated
44 ZNF425 1 94.0 Weakly correlated
45 ZNF441 1 43.0 Weakly correlated
46 ZNF695 1 28.9 Weakly correlated
47 ZNF680 1 28.9 Weakly correlated
48 ZNF471 1 94.0 Weakly correlated
49 ZNF667 1 99.0 Weakly correlated
50 ZNF490 1 43.0 Weakly correlated
51 ZFP28 1 99.0 Weakly correlated
52 ZNF534 1 19.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 3 87.0 Weakly correlated
2 ZNF766 2 43.0 Weakly correlated
3 ZNF479 2 6.4 Weakly correlated
4 ZNF701 2 28.9 Weakly correlated
5 ZNF75D 2 94.0 Weakly correlated
6 ZNF554 1 99.0 Weakly correlated
7 ZNF317 1 99.0 Weakly correlated
8 ZNF169 1 94.0 Weakly correlated
9 ZNF735 1 28.9 Weakly correlated
10 ZNF716 1 19.6 Weakly correlated
11 ZNF679 1 28.9 Weakly correlated
12 ZNF597 1 94.0 Weakly correlated
13 ZFP37 1 99.0 Weakly correlated
14 ZNF92 1 28.9 Weakly correlated
15 ZNF2 1 99.0 Weakly correlated
16 ZNF101 1 43.0 Weakly correlated
17 ZFP69B 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats