ZRdb KZFP & Repeats
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LTR_PABL_B

  • Name
    PABL_B
  • Repbase
    PABL_B
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0001050
Description :

PABL_B is an LTR for PABL_B-int endogenous retrovirus.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcaggccaggtctcactaacagccgaacaggcaggcctccatgacaactgtttcagcactgactgagtggttaagttaaatattaaaagctganagagccggtgcccttatacaaaggctggaatgtaacaaaagcccaccaagagttttgcctaggcctttcccgggccttgaagcatgacaagataacgaaggaattcttaacaggacccgtttaggattaaacaagttttattgggggtctgaagaaactccccagacctccacaaacaagttttattgggggtctaaaggaactccccaaacctccatgatttagcaggagacaagataagggtaatcaccccggcacctggacccatctagattaagtaaatttaccgaggctccagaggaaggtcttncaggactcagaccttagttanagattagaagttaatcacttatgtctttaggtgaatgcacacttacacgtaggcatatagcttagaangtatataagcnctggaaaactttgtaactttgagttggtctggtgatattntcccggccttctccctgtanccggttacagaaataaactcccttctttcccagttcgtctgcatctcgttattgggccgcgagaanaagcagcccgaccctcggttcggtccgggaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 27 99.0 Weakly correlated
2 ZNF394 11 99.0 Weakly correlated
3 ZNF317 9 99.0 Weakly correlated
4 ZNF730 8 19.6 Weakly correlated
5 ZNF534 7 19.6 Weakly correlated
6 ZNF2 7 99.0 Weakly correlated
7 ZNF701 6 28.9 Moderately correlated
8 ZNF558 6 99.0 Weakly correlated
9 ZNF766 5 43.0 Highly correlated
10 ZFP37 5 99.0 Weakly correlated
11 ZNF679 5 28.9 Moderately correlated
12 ZNF263 4 180.0 Weakly correlated
13 ZNF75D 4 94.0 Weakly correlated
14 ZNF101 4 43.0 Highly correlated
15 ZNF680 4 28.9 Moderately correlated
16 ZNF18 3 160.0 Weakly correlated
17 ZNF610 3 28.9 Moderately correlated
18 ZNF175 3 94.0 Weakly correlated
19 ZFP69B 2 99.0 Weakly correlated
20 ZNF735 2 28.9 Moderately correlated
21 ZNF563 1 28.9 Moderately correlated
22 ZNF573 1 94.0 Weakly correlated
23 ZNF589 1 28.9 Moderately correlated
24 ZNF597 1 94.0 Weakly correlated
25 ZNF554 1 99.0 Weakly correlated
26 ZNF611 1 19.6 Weakly correlated
27 ZNF141 1 43.0 Highly correlated
28 ZNF479 1 6.4 Weakly correlated
29 ZNF471 1 94.0 Weakly correlated
30 ZNF705B 1 28.9 Moderately correlated
31 ZNF705D 1 28.9 Moderately correlated
32 ZIM3 1 87.0 Weakly correlated
33 ZNF442 1 43.0 Highly correlated
34 ZNF441 1 43.0 Highly correlated
35 ZNF324 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF730 5 19.6 Weakly correlated
2 ZNF534 4 19.6 Weakly correlated
3 ZIM3 1 87.0 Weakly correlated
4 ZNF141 1 43.0 Highly correlated
5 ZNF679 1 28.9 Moderately correlated
6 ZNF573 1 94.0 Weakly correlated
7 ZNF680 1 28.9 Moderately correlated
8 ZNF597 1 94.0 Weakly correlated
9 ZNF701 1 28.9 Moderately correlated
10 ZNF735 1 28.9 Moderately correlated
11 ZNF75D 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats