ZRdb KZFP & Repeats
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LTR_PABL_A

  • Name
    PABL_A
  • Repbase
    PABL_A
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0000231
Description :

PABL_A is the LTR associated with PABL_A-int.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcaggccaggtctcactaacgcaggcctccataacaactgtttcagtactgactgagtggttaagttaaatattaaaagctgaaagagccagtgcccttatacaaaggctggaatgtaacaaaagcccaccaagagttttgcctaggcctttcctgggccttaaagcatgacaaaataacgaaggaattcttaacaggacccgtttaggattaaacaagttttattgggggtctgaagaaactccccaggcctccacaaacaagtttattgggggtctgaaggaactccccaaacctccgtgatttagcaggagacaagataagggtaatcaccccagcacctggacccatttagattaagtaaatttactgaggctccagaggaaggtcttcaggactcagaccttagttatagattaaaagaagttaatcacttatgtctttagatgaatgcacacttacacgtagacatatagcttagaaggtatataagctctggaaaactttgtaattttgagttggtctggcgataatttccaggccttctccctgtaaccggttacagaaataaaaactctcttcctccccagttcatctgcatctcgttattgggccgcgagaaatagcagcccgaccctcagtttggtccgggaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF730 122 19.6 Weakly correlated
2 ZIM3 10 87.0 Weakly correlated
3 ZNF766 10 43.0 Highly correlated
4 ZNF534 10 19.6 Weakly correlated
5 ZNF589 6 28.9 Moderately correlated
6 ZKSCAN8 5 160.0 Weakly correlated
7 ZNF175 5 94.0 Weakly correlated
8 ZNF382 5 99.0 Weakly correlated
9 ZNF479 3 6.4 Weakly correlated
10 ZNF2 3 99.0 Weakly correlated
11 ZNF584 3 99.0 Weakly correlated
12 ZNF257 3 0.0 Weakly correlated
13 ZNF197 3 99.0 Weakly correlated
14 ZKSCAN1 3 160.0 Weakly correlated
15 ZNF441 3 43.0 Highly correlated
16 ZNF519 2 19.6 Weakly correlated
17 ZNF679 2 28.9 Moderately correlated
18 ZNF610 2 28.9 Moderately correlated
19 ZNF394 2 99.0 Weakly correlated
20 ZNF701 2 28.9 Moderately correlated
21 ZNF705B 2 28.9 Moderately correlated
22 ZNF793 2 99.0 Weakly correlated
23 ZNF101 2 43.0 Highly correlated
24 ZNF182 2 99.0 Weakly correlated
25 ZFP57 2 87.0 Weakly correlated
26 ZNF613 1 99.0 Weakly correlated
27 ZFP69B 1 99.0 Weakly correlated
28 ZNF75D 1 94.0 Weakly correlated
29 ZNF169 1 94.0 Weakly correlated
30 ZNF705D 1 28.9 Moderately correlated
31 ZNF18 1 160.0 Weakly correlated
32 ZNF202 1 160.0 Weakly correlated
33 ZNF263 1 180.0 Weakly correlated
34 ZNF597 1 94.0 Weakly correlated
35 ZNF274 1 99.0 Weakly correlated
36 ZNF284 1 43.0 Highly correlated
37 ZNF563 1 28.9 Moderately correlated
38 ZNF324 1 99.0 Weakly correlated
39 ZNF347 1 43.0 Highly correlated
40 ZNF486 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF730 114 19.6 Weakly correlated
2 ZIM3 3 87.0 Weakly correlated
3 ZNF534 2 19.6 Weakly correlated
4 ZNF175 2 94.0 Weakly correlated
5 ZNF589 2 28.9 Moderately correlated
6 ZNF479 2 6.4 Weakly correlated
7 ZNF101 1 43.0 Highly correlated
8 ZNF257 1 0.0 Weakly correlated
9 ZNF263 1 180.0 Weakly correlated
10 ZNF679 1 28.9 Moderately correlated
11 ZNF197 1 99.0 Weakly correlated
12 ZNF584 1 99.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats