ZRdb KZFP & Repeats
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LTR_PABL_A-INT

  • Name
    PABL_A-INT
  • Repbase
    PABL_AI
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0000235
Description :

The associated long terminal repeat is PABL_A. PABL_A is a non-autonomous product of a recombination between a PABL_B-like ERV andMER4- and HERV19-like elements.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
aaatttggcgagccagccaggagagaccgggacggtgctgcgttcagcggccggcggcttgcgacgagacagtcttcaggaggatcccagcagctgccgggtgaggttttcccggggaccctcccgagggctgtcccgtgcgcaaanctgcacgtccctttcactactggggaagaacggagatcaggagcggacgcgctcaaagggtgagttaaccggatcgtatgccgggagcctattgttttcctatctgggcttgttaagccatttgtccggtaccgccaagggaagcaatagggctcgctcatacacccgctttgcattttggttgagatcaggttttgagttggttttgagtctgttttgcctgagtgcactcccccttgtgttgtccgaaatttgtctccacttgtttgtgtatctgtcttattccttttgataccatgtaaacttgaaaatgggaggtattgggtccattcctgctgagaggcctctgggaaggaaaaanatttttttaggagctcaatggttaaaagtcagcttaattaaaagctaacatccaagatgtgtgtgtgtatgtgtgcatgtttgtatttaaaaggccttcatgtttttgtttntttctctcctaggaccttgtctttttgagcaaaagtttttttcttctcagttgactgaattctgttttcttcattaatagttattgcaacagaggctactcttgggtttttaaggaagagtgtagtttagacacttagaaatgtctttgtttggaaaaaaattttaagtgcactgtaaaagcatcacgtggtctagcctcataataattctccctttttggagacccaggattcagtgtgggctctgcccagagctcagagatccagttaaaagataggtagtccctatctaaataaaattggtctccttatacaatcctatgatagatttctataattttatgtttgatttggcatccatctttaatctccctctagcaccaccagactttttctctctgtaccttgtgatgtaaattttgctatttgatttttcacctaagagttgtttcctttaatatgcaaatttaaggctatttagctgacaactgccagggtnatgaaacaggttatcaagaatttgaaagtctaagataggaaaaaggaggtcttatgaatctataagatgtacttctatcggcatgcctaatacgtctatgtatttatgtgttgtgtacacaatgtttcactactgaaaatatataaaagagctctaattaattggctcaaagaaaaataaaagcgcttaaatactttancagaaaaaaggaaagactagtcaaatgctttttcaagtttacgtgacttaagtaaaatctttaataaataagctagctttaaaaattattggtaaagtaatattagaaatgtcttaagaattgccagcatacatttttgtttgcatttattgatcaagcaatttcatacttatccctgccaaatactataaggtgtcaaaatttggcataggggctacaaaactataacccagcccaaaacagaatgatctttgcttgtgtaatttttaataaataagacattgatattggtttaatgaagatagctacatcttgaattatttagtaaaataccctaacttntaatcttgtggcntccgncgntcnagtccgcgnncgcgnncgnnnnnnnnnnnncgnnnnnnnnnnnnncgnnnnnnncgcgnnnnnnnnnnnnncgcgnnnnnnnnnccgcgnngnnnnnnncgnnncgnnncgnncccgnnnnnnccgnnnnnnnnncgcgnccgcgnncgcgnnnncgnnnncgcgncgncgnnnnnntaactttaaatgatgactatcacagttttcataaataatctaggtaaatgattaaaataaataattagataaatgtaatgggataaatactcgtaaacaacttgtcataatttagaatctaaagttatattaaattaaacaacagatatttcattatttgggtattttccaataaaaatatattgtaggaaaacattctttctaaaaattgtgtcctttttaaagggtaactaatttttgtctaattcaaagcttatttaaaggttatatataaaacaaggtaaaagaaaccaggaaataagagagatataaagaaagttataaaaataaaanagttttaaagattattggtaaaataaaaatatcttcaaaaatgtaaacatttggtctaaattatgcaggtcagatattaggtttgctaaatgctttaggtcataaactgcttctttgacttaaaaattgttcaatttattttggagcgttagattctagataaggcctggggacatgtggaattagccatgccccctagctatgcaaaaaggttntaaagaaaagagattttatataagaaaggatcttgtatggtaaattcttgtcctaaagtaaaatgactggttgtttaaaaagagggatgtttaggacaagtcagaaagtccaagcatgtcgtagatggtctgtgtaagtcgtgaaagaatttatgaaagggaatttatgcaagaaatgttgtacaatttaaaggtgattaggcctcctaaatgcttcataaaatgccactatgactcttaactgtacaacttgcctgctttacagctaggtaaggcctgggacacgtggagttagacgctggaaagagtcagaccttatctgcacttctgtctgggtcctaggctccacacctagtacataattaaaatcccnnacttaccaaggttttcaccaaaagtaaaagttgctaagagttaacantgtaacatgtanttgagactactgaagaaacagtttacatgcaaggtgtgtaaggaaagtgaaatgtgtttttggtaaaangattataagaaggcatgggaatgtggatttttgcctagattaaagggttaaaggattgttttaagttagataaaataaagctgaaggtttaagcaagttgtggaaggttaattgtaaaagaaattctgtgtgtgaacatattggctaaagttaaaggggtattattcagtttttcctgtaaattgaacattggaataaaagcacaacaggtttttcttagagcactgatctgctctttaacaaaaattgtaaagggttataaaaggtttatgagaatcttaccttatggtcaaacattaaaattgggtagatntgtctataaggttttattaagaattgggtttaacattaatagtacactaatgcaaaggtgaaatttggcttatttggtataaaaatcatacaggaagcattgtcaaatatgaaatggtgtttggctttctttgggctgtatttgtataaatatgttattggtatgtgttccaaaattatgggaaactcctataattctgatatgacttagtgtacgttatcantaataattataattgttacgtaaaattattgtgtgccacagaggtaacaaatttccttgtcaattgtgnctttaacngtggctgccctaagactttttgtcatccacagacaattgttgtcttgttttgatcctctttagaaggtggttttataatcagctatagaactctaacaggtgctcttaaatgcaggtttctgataactttggagattgtgacattagaatagaggaaaaactttcaggactcttggagagctgaaatgttcatgaatatcaagcagaacaggagttaactgcatggactgaactaatagaagactgaagtaatctttttgactttttgcttaaaacgttgctgatcctttgttttgtttttcagagtcaaggaaacttttcttttgagctatttacagcttttaacaattgagtaaagtatactcctgtgaacaaaatttggagcatatttgtttctctctacctgatttnctccagaatttggaaactatttgtgagtattcttaacttatggcaatatagttatttgcataagtgcaataagaatctgttttcttttgtaacaggacacaattggagaaactggttattttnaccaaggctttgactggaatggtgtgctttcctttaaggaatcaaacttgacttgtagagccaataaagcccttggaaaactggcctcataccttgtctacacagtccctgtacagggtttctgacctgtggtaagtaaagaatgtcactttctgacaggccaggagccccaagttatcttgggacctcaagaggagaggaatttacccaactcataggtatttganggtacaaacccatggctgggctcggctttaaaaaagtcttatctgagattccttctatggaacagagttccatcaaagccaatttaaaaagcctatgtgaaaaataattattcttgctgcactttatacaaataatcaggccaagtataataaagcaaatcggtcttaccatgatttgtctttnagtaaaaatgggaaactggagagagaaaaatatgtttcaagaactatggtacacctgttattaaattctagtctcgtcngttgtttttnagtttttattattttctgcagtttggactaaattctaatttttctggctacaagtctccaaaataatgttttcaattttttcctttttcttttcctttttccccatttttcctaattggaaatcactgaaacctaagctgtgctttcttaaagccctgcgaactgaagactagacaacttaaacttcagaagaaaacagcagcaacctatttatatgtgttgctgttgcatactattatgtttcagcaggcgctgcctctaagcccccgaaacagagagtgctaccgggaacaaatcgacctcttccactccagcgctgcgttcggtgccccataacgacgaccccctctcagcaggaagtagccagaaagattacgatgccccatctccctacgattctcgtgataaataaatatacaagcatgatagaaatcatgcgcaaattgacagtggggat
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF486 69 8.6 Weakly correlated
2 ZNF43 33 43.0 Weakly correlated
3 ZNF85 18 28.9 Weakly correlated
4 ZNF547 15 74.0 Highly correlated
5 ZIM3 12 87.0 Weakly correlated
6 ZNF317 10 99.0 Weakly correlated
7 ZNF766 10 43.0 Weakly correlated
8 ZNF382 8 99.0 Weakly correlated
9 ZNF816 8 28.9 Weakly correlated
10 ZNF730 8 19.6 Weakly correlated
11 ZNF175 6 94.0 Weakly correlated
12 ZNF257 6 0.0 Weakly correlated
13 ZNF549 5 87.0 Weakly correlated
14 ZNF793 5 99.0 Weakly correlated
15 ZNF610 5 28.9 Weakly correlated
16 ZNF324 5 99.0 Weakly correlated
17 ZNF140 4 99.0 Weakly correlated
18 ZNF558 4 99.0 Weakly correlated
19 ZNF584 4 99.0 Weakly correlated
20 ZNF589 4 28.9 Weakly correlated
21 ZNF425 3 94.0 Weakly correlated
22 ZNF394 3 99.0 Weakly correlated
23 ZFP57 3 87.0 Weakly correlated
24 ZNF251 3 94.0 Weakly correlated
25 ZKSCAN1 3 160.0 Weakly correlated
26 ZFP37 3 99.0 Weakly correlated
27 ZNF679 2 28.9 Weakly correlated
28 ZKSCAN8 2 160.0 Weakly correlated
29 ZNF554 2 99.0 Weakly correlated
30 ZNF534 2 19.6 Weakly correlated
31 ZNF528 2 43.0 Weakly correlated
32 ZNF519 2 19.6 Weakly correlated
33 ZNF18 2 160.0 Weakly correlated
34 ZNF680 2 28.9 Weakly correlated
35 ZNF723 2 15.2 Weakly correlated
36 ZNF197 2 99.0 Weakly correlated
37 ZNF2 2 99.0 Weakly correlated
38 ZNF33A 2 99.0 Weakly correlated
39 ZNF671 1 94.0 Weakly correlated
40 ZNF91 1 6.0 Weakly correlated
41 ZNF674 1 99.0 Weakly correlated
42 ZNF8 1 99.0 Weakly correlated
43 ZNF878 1 43.0 Weakly correlated
44 ZNF700 1 28.9 Weakly correlated
45 ZNF735 1 28.9 Weakly correlated
46 ZNF669 1 43.0 Weakly correlated
47 ZNF557 1 15.2 Weakly correlated
48 ZNF485 1 94.0 Weakly correlated
49 ZNF479 1 6.4 Weakly correlated
50 ZNF441 1 43.0 Weakly correlated
51 ZNF440 1 28.9 Weakly correlated
52 ZNF433 1 43.0 Weakly correlated
53 ZNF417 1 28.9 Weakly correlated
54 ZNF284 1 43.0 Weakly correlated
55 ZNF274 1 99.0 Weakly correlated
56 ZNF264 1 99.0 Weakly correlated
57 ZNF211 1 94.0 Weakly correlated
58 ZNF182 1 99.0 Weakly correlated
59 ZNF133 1 99.0 Weakly correlated
60 ZFP69 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF43 30 43.0 Weakly correlated
2 ZNF85 12 28.9 Weakly correlated
3 ZIM3 7 87.0 Weakly correlated
4 ZNF816 4 28.9 Weakly correlated
5 ZNF257 4 0.0 Weakly correlated
6 ZNF793 3 99.0 Weakly correlated
7 ZNF549 2 87.0 Weakly correlated
8 ZNF766 2 43.0 Weakly correlated
9 ZNF425 1 94.0 Weakly correlated
10 ZNF680 1 28.9 Weakly correlated
11 ZNF669 1 43.0 Weakly correlated
12 ZNF674 1 99.0 Weakly correlated
13 ZNF735 1 28.9 Weakly correlated
14 ZNF417 1 28.9 Weakly correlated
15 ZNF274 1 99.0 Weakly correlated
16 ZNF534 1 19.6 Weakly correlated
17 ZNF479 1 6.4 Weakly correlated
18 ZFP37 1 99.0 Weakly correlated
19 ZNF723 1 15.2 Weakly correlated
20 ZNF485 1 94.0 Weakly correlated
21 ZNF382 1 99.0 Weakly correlated
22 ZNF486 1 8.6 Weakly correlated
23 ZNF133 1 99.0 Weakly correlated
24 ZFP57 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Weakly correlated
2 ZNF43 43.0 Weakly correlated
3 ZNF85 28.9 Weakly correlated