ZRdb KZFP & Repeats
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LTR_MSTB2

  • Name
    MSTB2
  • Repbase
    MSTA2
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0001134
Description :

Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgctatggtttggatatggtttgtttgtccccaccaaaactcatgttgaaatttgatccccaatgtggcggtgttgggaggtggggcctagtgggaggtgtttgggtcatgggggcggatccctcatgaatggcttggtgccgttctcgcggtagtgagtgagtgagttctcgctctcgcgagactggattagttctcgcgggaatggattagttcccgcgagagtgggttgttataaagccaggacgcccctcgggttttgcctcttcgcacgtgtccgcttcccctttgaccttctccgccatgttntgacgcagcacgaaagccctcaccagaagccagggccatgcccttgaacttcccagcctgcagaaccgtgagctaaataaacctcttttctttataaattacccagtctcaggtattctgttatagcaacacaaaacggactaagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 369 43.0 Weakly correlated
2 ZNF382 75 99.0 Weakly correlated
3 ZNF320 69 28.9 Weakly correlated
4 ZNF274 37 99.0 Weakly correlated
5 ZNF564 34 74.0 Highly correlated
6 ZNF2 19 99.0 Weakly correlated
7 ZNF680 19 28.9 Weakly correlated
8 ZNF263 18 180.0 Weakly correlated
9 ZIM3 17 87.0 Weakly correlated
10 ZNF394 17 99.0 Weakly correlated
11 ZNF317 16 99.0 Weakly correlated
12 ZFP69B 15 99.0 Weakly correlated
13 ZNF18 14 160.0 Weakly correlated
14 ZNF695 12 28.9 Weakly correlated
15 ZNF479 11 6.4 Weakly correlated
16 ZNF554 11 99.0 Weakly correlated
17 ZNF679 11 28.9 Weakly correlated
18 ZFP37 10 99.0 Weakly correlated
19 ZNF707 8 74.0 Highly correlated
20 ZNF140 8 99.0 Weakly correlated
21 ZNF425 7 94.0 Weakly correlated
22 ZNF682 7 28.9 Weakly correlated
23 ZFP57 7 87.0 Weakly correlated
24 ZKSCAN1 6 160.0 Weakly correlated
25 ZNF597 5 94.0 Weakly correlated
26 ZNF705B 5 28.9 Weakly correlated
27 ZNF534 5 19.6 Weakly correlated
28 ZNF251 4 94.0 Weakly correlated
29 ZNF257 4 0.0 Weakly correlated
30 ZNF28 3 28.9 Weakly correlated
31 ZNF705D 3 28.9 Weakly correlated
32 ZNF610 3 28.9 Weakly correlated
33 ZNF677 3 99.0 Weakly correlated
34 ZNF282 3 319.0 Weakly correlated
35 ZNF558 3 99.0 Weakly correlated
36 ZNF547 3 74.0 Highly correlated
37 ZNF175 2 94.0 Weakly correlated
38 ZNF287 2 99.0 Weakly correlated
39 ZNF519 2 19.6 Weakly correlated
40 ZNF528 2 43.0 Weakly correlated
41 ZNF823 2 43.0 Weakly correlated
42 ZNF101 2 43.0 Weakly correlated
43 ZKSCAN8 2 160.0 Weakly correlated
44 ZKSCAN5 2 160.0 Weakly correlated
45 ZNF585A 2 99.0 Weakly correlated
46 ZNF585B 2 99.0 Weakly correlated
47 ZNF605 2 99.0 Weakly correlated
48 ZNF490 2 43.0 Weakly correlated
49 ZNF324 2 99.0 Weakly correlated
50 ZNF793 2 99.0 Weakly correlated
51 ZNF792 2 94.0 Weakly correlated
52 ZNF776 2 43.0 Weakly correlated
53 ZNF273 2 28.9 Weakly correlated
54 ZNF429 2 28.9 Weakly correlated
55 ZNF723 2 15.2 Weakly correlated
56 ZNF468 2 28.9 Weakly correlated
57 ZNF248 2 99.0 Weakly correlated
58 ZNF816 2 28.9 Weakly correlated
59 ZNF84 1 99.0 Weakly correlated
60 ZNF813 1 28.9 Weakly correlated
61 ZFP30 1 99.0 Weakly correlated
62 ZNF778 1 74.0 Highly correlated
63 ZNF780A 1 43.0 Weakly correlated
64 ZNF701 1 28.9 Weakly correlated
65 ZNF879 1 99.0 Weakly correlated
66 ZNF440 1 28.9 Weakly correlated
67 ZFP69 1 99.0 Weakly correlated
68 ZNF10 1 99.0 Weakly correlated
69 ZNF169 1 94.0 Weakly correlated
70 ZNF202 1 160.0 Weakly correlated
71 ZNF264 1 99.0 Weakly correlated
72 ZNF337 1 43.0 Weakly correlated
73 ZNF343 1 74.0 Highly correlated
74 ZNF347 1 43.0 Weakly correlated
75 ZNF350 1 99.0 Weakly correlated
76 ZNF383 1 99.0 Weakly correlated
77 ZNF41 1 99.0 Weakly correlated
78 ZNF589 1 28.9 Weakly correlated
79 ZNF471 1 94.0 Weakly correlated
80 ZNF480 1 43.0 Weakly correlated
81 ZNF484 1 99.0 Weakly correlated
82 ZNF506 1 28.9 Weakly correlated
83 ZNF510 1 99.0 Weakly correlated
84 ZNF549 1 87.0 Weakly correlated
85 ZNF550 1 94.0 Weakly correlated
86 ZNF563 1 28.9 Weakly correlated
87 ZNF567 1 99.0 Weakly correlated
88 ZNF584 1 99.0 Weakly correlated
89 ZNF587B 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 186 43.0 Weakly correlated
2 ZNF564 31 74.0 Highly correlated
3 ZNF320 30 28.9 Weakly correlated
4 ZNF263 8 180.0 Weakly correlated
5 ZIM3 8 87.0 Weakly correlated
6 ZNF680 7 28.9 Weakly correlated
7 ZNF479 7 6.4 Weakly correlated
8 ZFP69B 6 99.0 Weakly correlated
9 ZNF382 4 99.0 Weakly correlated
10 ZNF554 4 99.0 Weakly correlated
11 ZNF695 4 28.9 Weakly correlated
12 ZNF282 2 319.0 Weakly correlated
13 ZNF28 2 28.9 Weakly correlated
14 ZNF468 2 28.9 Weakly correlated
15 ZNF677 2 99.0 Weakly correlated
16 ZNF793 2 99.0 Weakly correlated
17 ZFP57 2 87.0 Weakly correlated
18 ZNF776 2 43.0 Weakly correlated
19 ZFP37 2 99.0 Weakly correlated
20 ZKSCAN1 2 160.0 Weakly correlated
21 ZNF816 2 28.9 Weakly correlated
22 ZKSCAN5 2 160.0 Weakly correlated
23 ZNF140 1 99.0 Weakly correlated
24 ZNF723 1 15.2 Weakly correlated
25 ZNF705D 1 28.9 Weakly correlated
26 ZNF605 1 99.0 Weakly correlated
27 ZNF705B 1 28.9 Weakly correlated
28 ZNF343 1 74.0 Highly correlated
29 ZFP69 1 99.0 Weakly correlated
30 ZNF780A 1 43.0 Weakly correlated
31 ZNF324 1 99.0 Weakly correlated
32 ZNF274 1 99.0 Weakly correlated
33 ZNF350 1 99.0 Weakly correlated
34 ZNF597 1 94.0 Weakly correlated
35 ZNF549 1 87.0 Weakly correlated
36 ZNF534 1 19.6 Weakly correlated
37 ZNF429 1 28.9 Weakly correlated
38 ZNF558 1 99.0 Weakly correlated
39 ZNF18 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP69B 99.0 Weakly correlated
2 ZIM3 87.0 Weakly correlated
3 ZNF320 28.9 Weakly correlated