ZRdb KZFP & Repeats
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LTR_MSTB1

  • Name
    MSTB1
  • Repbase
    MSTB1
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0001043
Description :

MSTB1 has 5 bp TSDs. This is an intermediate subfamily between MSTB andMSTC Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgctatagtttggatgtttgtcccctccaaacctcatgttgaaatttgatccccagtgttggaggtggggcctaatgggaggtgtttgggtcatgggggcggatccctcatgaatggnttggtgccctccctcggggtggggatgagtgagttctcgctctattagttcccgcgagagctggttgttaaaaagagcctggcacctccctcctctctctcttgcttcctctctcgccatgtgatctctgcacacgccggctccccttcgccttccgccatgagtggaagcagcctgaggccctcaccagaagcagatgctggcgccatgcttcttgtacagcctgcagaaccgtgagccaaataaacctcttttctttataaattacccagcctcaggtattcctttatagcaacacaaaacggactaagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 1063 43.0 Weakly correlated
2 ZNF382 286 99.0 Weakly correlated
3 ZNF320 130 28.9 Weakly correlated
4 ZNF705B 84 28.9 Weakly correlated
5 ZNF263 78 180.0 Weakly correlated
6 ZNF274 78 99.0 Weakly correlated
7 ZNF394 72 99.0 Weakly correlated
8 ZNF679 72 28.9 Weakly correlated
9 ZNF18 58 160.0 Weakly correlated
10 ZNF2 53 99.0 Weakly correlated
11 ZNF705D 50 28.9 Weakly correlated
12 ZFP69B 49 99.0 Weakly correlated
13 ZNF554 49 99.0 Weakly correlated
14 ZFP37 43 99.0 Weakly correlated
15 ZNF257 37 0.0 Weakly correlated
16 ZNF324 36 99.0 Weakly correlated
17 ZNF680 35 28.9 Weakly correlated
18 ZNF101 34 43.0 Weakly correlated
19 ZNF317 31 99.0 Weakly correlated
20 ZNF425 31 94.0 Weakly correlated
21 ZNF558 29 99.0 Weakly correlated
22 ZNF610 29 28.9 Weakly correlated
23 ZNF534 27 19.6 Weakly correlated
24 ZNF707 27 74.0 Highly correlated
25 ZNF793 24 99.0 Weakly correlated
26 ZKSCAN1 18 160.0 Weakly correlated
27 ZNF251 16 94.0 Weakly correlated
28 ZNF723 16 15.2 Weakly correlated
29 ZNF549 15 87.0 Weakly correlated
30 ZNF701 15 28.9 Weakly correlated
31 ZNF584 14 99.0 Weakly correlated
32 ZNF485 13 94.0 Weakly correlated
33 ZNF778 13 74.0 Highly correlated
34 ZNF175 12 94.0 Weakly correlated
35 ZNF589 12 28.9 Weakly correlated
36 ZNF479 11 6.4 Weakly correlated
37 ZKSCAN5 10 160.0 Weakly correlated
38 ZNF264 10 99.0 Weakly correlated
39 ZIM3 9 87.0 Weakly correlated
40 ZNF468 9 28.9 Weakly correlated
41 ZNF695 9 28.9 Weakly correlated
42 ZNF140 8 99.0 Weakly correlated
43 ZNF528 8 43.0 Weakly correlated
44 ZNF224 7 69.0 Moderately correlated
45 ZNF547 7 74.0 Highly correlated
46 ZNF816 7 28.9 Weakly correlated
47 ZFP57 6 87.0 Weakly correlated
48 ZNF169 6 94.0 Weakly correlated
49 ZNF17 6 69.0 Moderately correlated
50 ZNF519 6 19.6 Weakly correlated
51 ZNF776 6 43.0 Weakly correlated
52 ZNF823 6 43.0 Weakly correlated
53 ZNF8 6 99.0 Weakly correlated
54 ZKSCAN8 5 160.0 Weakly correlated
55 ZNF100 5 28.9 Weakly correlated
56 ZNF197 5 99.0 Weakly correlated
57 ZNF28 5 28.9 Weakly correlated
58 ZNF490 5 43.0 Weakly correlated
59 ZNF506 5 28.9 Weakly correlated
60 ZNF92 5 28.9 Weakly correlated
61 ZFP28 4 99.0 Weakly correlated
62 ZNF182 4 99.0 Weakly correlated
63 ZNF284 4 43.0 Weakly correlated
64 ZNF350 4 99.0 Weakly correlated
65 ZNF585A 4 99.0 Weakly correlated
66 ZNF730 4 19.6 Weakly correlated
67 ZNF735 4 28.9 Weakly correlated
68 ZNF75D 4 94.0 Weakly correlated
69 ZNF133 3 99.0 Weakly correlated
70 ZNF441 3 43.0 Weakly correlated
71 ZNF44 3 43.0 Weakly correlated
72 ZNF563 3 28.9 Weakly correlated
73 ZNF597 3 94.0 Weakly correlated
74 ZNF682 3 28.9 Weakly correlated
75 ZNF84 3 99.0 Weakly correlated
76 ZNF136 2 74.0 Highly correlated
77 ZNF141 2 43.0 Weakly correlated
78 ZNF248 2 99.0 Weakly correlated
79 ZNF26 2 99.0 Weakly correlated
80 ZNF282 2 319.0 Weakly correlated
81 ZNF30 2 94.0 Weakly correlated
82 ZNF331 2 94.0 Weakly correlated
83 ZNF354C 2 99.0 Weakly correlated
84 ZNF417 2 28.9 Weakly correlated
85 ZNF585B 2 99.0 Weakly correlated
86 ZNF681 2 28.9 Weakly correlated
87 ZNF780A 2 43.0 Weakly correlated
88 ZNF93 2 8.6 Weakly correlated
89 ZIK1 1 87.0 Weakly correlated
90 ZNF189 1 99.0 Weakly correlated
91 ZNF230 1 28.9 Weakly correlated
92 ZNF267 1 43.0 Weakly correlated
93 ZNF273 1 28.9 Weakly correlated
94 ZNF300 1 99.0 Weakly correlated
95 ZNF337 1 43.0 Weakly correlated
96 ZNF343 1 74.0 Highly correlated
97 ZNF347 1 43.0 Weakly correlated
98 ZNF41 1 99.0 Weakly correlated
99 ZNF440 1 28.9 Weakly correlated
100 ZNF484 1 99.0 Weakly correlated
101 ZNF510 1 99.0 Weakly correlated
102 ZNF559 1 74.0 Highly correlated
103 ZNF564 1 74.0 Highly correlated
104 ZNF605 1 99.0 Weakly correlated
105 ZNF607 1 43.0 Weakly correlated
106 ZNF611 1 19.6 Weakly correlated
107 ZNF671 1 94.0 Weakly correlated
108 ZNF677 1 99.0 Weakly correlated
109 ZNF684 1 99.0 Weakly correlated
110 ZNF705G 1 28.9 Weakly correlated
111 ZNF727 1 19.6 Weakly correlated
112 ZNF765 1 8.6 Weakly correlated
113 ZNF780B 1 74.0 Highly correlated
114 ZNF786 1 99.0 Weakly correlated
115 ZNF789 1 99.0 Weakly correlated
116 ZNF792 1 94.0 Weakly correlated
117 ZNF808 1 19.6 Weakly correlated
118 ZNF85 1 28.9 Weakly correlated
119 ZNF879 1 99.0 Weakly correlated
120 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 547 43.0 Weakly correlated
2 ZNF320 58 28.9 Weakly correlated
3 ZNF679 38 28.9 Weakly correlated
4 ZNF257 22 0.0 Weakly correlated
5 ZFP69B 17 99.0 Weakly correlated
6 ZNF263 17 180.0 Weakly correlated
7 ZNF534 15 19.6 Weakly correlated
8 ZNF705B 13 28.9 Weakly correlated
9 ZNF18 13 160.0 Weakly correlated
10 ZNF382 9 99.0 Weakly correlated
11 ZKSCAN5 9 160.0 Weakly correlated
12 ZNF680 8 28.9 Weakly correlated
13 ZNF793 8 99.0 Weakly correlated
14 ZNF705D 7 28.9 Weakly correlated
15 ZNF776 6 43.0 Weakly correlated
16 ZNF468 5 28.9 Weakly correlated
17 ZNF554 4 99.0 Weakly correlated
18 ZNF485 4 94.0 Weakly correlated
19 ZNF101 4 43.0 Weakly correlated
20 ZIM3 4 87.0 Weakly correlated
21 ZNF816 4 28.9 Weakly correlated
22 ZFP37 3 99.0 Weakly correlated
23 ZNF823 3 43.0 Weakly correlated
24 ZNF169 3 94.0 Weakly correlated
25 ZNF695 2 28.9 Weakly correlated
26 ZNF251 2 94.0 Weakly correlated
27 ZNF701 2 28.9 Weakly correlated
28 ZNF28 2 28.9 Weakly correlated
29 ZFP57 2 87.0 Weakly correlated
30 ZNF479 2 6.4 Weakly correlated
31 ZNF100 2 28.9 Weakly correlated
32 ZNF140 2 99.0 Weakly correlated
33 ZNF549 2 87.0 Weakly correlated
34 ZNF723 2 15.2 Weakly correlated
35 ZNF735 2 28.9 Weakly correlated
36 ZNF324 2 99.0 Weakly correlated
37 ZNF2 1 99.0 Weakly correlated
38 ZNF44 1 43.0 Weakly correlated
39 ZFP28 1 99.0 Weakly correlated
40 ZNF417 1 28.9 Weakly correlated
41 ZNF677 1 99.0 Weakly correlated
42 ZNF597 1 94.0 Weakly correlated
43 ZNF175 1 94.0 Weakly correlated
44 ZNF282 1 319.0 Weakly correlated
45 ZNF558 1 99.0 Weakly correlated
46 ZNF8 1 99.0 Weakly correlated
47 ZNF589 1 28.9 Weakly correlated
48 ZNF792 1 94.0 Weakly correlated
49 ZNF490 1 43.0 Weakly correlated
50 ZNF354C 1 99.0 Weakly correlated
51 ZNF778 1 74.0 Highly correlated
52 ZNF780A 1 43.0 Weakly correlated
53 ZNF585A 1 99.0 Weakly correlated
54 ZNF425 1 94.0 Weakly correlated
55 ZNF564 1 74.0 Highly correlated
56 ZNF528 1 43.0 Weakly correlated
57 ZNF671 1 94.0 Weakly correlated
58 ZNF274 1 99.0 Weakly correlated
59 ZNF267 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP69B 99.0 Weakly correlated
2 ZKSCAN5 160.0 Weakly correlated
3 ZNF18 160.0 Weakly correlated
4 ZNF257 0.0 Weakly correlated
5 ZNF320 28.9 Weakly correlated
6 ZNF534 19.6 Weakly correlated
7 ZNF705D 28.9 Weakly correlated