ZRdb KZFP & Repeats
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LTR_MSTB

  • Name
    MSTB
  • Repbase
    MSTB
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0001042
Description :

MSTB has 5 bp TSDs. This is an intermediate subfamily between MSTA andMSTB1. Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatatggtttggatgtttgtcccctccaaatctcatgttgaaatgtgatccccagtgttggaggtggggcctggtgggaggtgtttgggtcatgggggcggatccctcatgaatggcttggcgccgtccccntggtgatgagtgagttctcgctctgttagttcacgcgagatctggttgtttaaaagagtntggcacctcccccctctctctcttgctcccgctctcgccatgtgacgcgcctgctcccccttcgccttccgccatgattgnaagcttcctgaggcctcaccagaagccgagcagatgccggcgccatgcttcctgtacagcctgcagaaccgtgagccaantaaacctcttttctttataaattacccagcctcaggtattcctttatagcaacgcaagaacggactaacaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF585B 296 99.0 Weakly correlated
2 ZNF486 192 8.6 Weakly correlated
3 ZNF675 150 8.6 Weakly correlated
4 ZNF586 142 43.0 Highly correlated
5 ZNF707 94 74.0 Weakly correlated
6 ZNF679 57 28.9 Moderately correlated
7 ZNF766 50 43.0 Highly correlated
8 ZNF547 29 74.0 Weakly correlated
9 ZNF479 24 6.4 Weakly correlated
10 ZNF793 22 99.0 Weakly correlated
11 ZNF506 21 28.9 Moderately correlated
12 ZNF680 20 28.9 Moderately correlated
13 ZNF263 15 180.0 Weakly correlated
14 ZNF836 13 43.0 Highly correlated
15 ZNF765 12 8.6 Weakly correlated
16 ZIM3 12 87.0 Weakly correlated
17 ZNF382 11 99.0 Weakly correlated
18 ZNF274 10 99.0 Weakly correlated
19 ZNF317 9 99.0 Weakly correlated
20 ZNF320 9 28.9 Moderately correlated
21 ZNF723 8 15.2 Weakly correlated
22 ZNF534 7 19.6 Weakly correlated
23 ZNF528 5 43.0 Highly correlated
24 ZNF251 5 94.0 Weakly correlated
25 ZNF28 4 28.9 Moderately correlated
26 ZNF44 4 43.0 Highly correlated
27 ZNF584 4 99.0 Weakly correlated
28 ZNF92 4 28.9 Moderately correlated
29 ZNF558 3 99.0 Weakly correlated
30 ZNF560 3 43.0 Highly correlated
31 ZNF554 3 99.0 Weakly correlated
32 ZNF468 3 28.9 Moderately correlated
33 ZNF735 3 28.9 Moderately correlated
34 ZNF394 3 99.0 Weakly correlated
35 ZNF75D 3 94.0 Weakly correlated
36 ZNF2 3 99.0 Weakly correlated
37 ZNF808 3 19.6 Weakly correlated
38 ZNF182 3 99.0 Weakly correlated
39 ZNF175 3 94.0 Weakly correlated
40 ZNF114 3 28.9 Moderately correlated
41 ZFP57 3 87.0 Weakly correlated
42 ZNF682 2 28.9 Moderately correlated
43 ZNF684 2 99.0 Weakly correlated
44 ZNF589 2 28.9 Moderately correlated
45 ZNF786 2 99.0 Weakly correlated
46 ZNF823 2 43.0 Highly correlated
47 ZFP37 2 99.0 Weakly correlated
48 ZNF549 2 87.0 Weakly correlated
49 ZNF41 2 99.0 Weakly correlated
50 ZNF101 2 43.0 Highly correlated
51 ZNF485 2 94.0 Weakly correlated
52 ZNF483 2 99.0 Weakly correlated
53 ZNF471 2 94.0 Weakly correlated
54 ZNF429 2 28.9 Moderately correlated
55 ZNF334 1 99.0 Weakly correlated
56 ZNF705D 1 28.9 Moderately correlated
57 ZNF324 1 99.0 Weakly correlated
58 ZNF302 1 43.0 Highly correlated
59 ZNF777 1 319.0 Weakly correlated
60 ZNF287 1 99.0 Weakly correlated
61 ZNF264 1 99.0 Weakly correlated
62 ZNF197 1 99.0 Weakly correlated
63 ZKSCAN1 1 160.0 Weakly correlated
64 ZNF91 1 6.0 Weakly correlated
65 RBAK 1 99.0 Weakly correlated
66 ZNF417 1 28.9 Moderately correlated
67 ZNF425 1 94.0 Weakly correlated
68 ZNF551 1 94.0 Weakly correlated
69 ZNF705B 1 28.9 Moderately correlated
70 ZNF441 1 43.0 Highly correlated
71 ZNF616 1 43.0 Highly correlated
72 ZNF610 1 28.9 Moderately correlated
73 ZNF597 1 94.0 Weakly correlated
74 ZNF490 1 43.0 Highly correlated
75 ZNF519 1 19.6 Weakly correlated
76 ZNF550 1 94.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF585B 154 99.0 Weakly correlated
2 ZNF675 146 8.6 Weakly correlated
3 ZNF586 139 43.0 Highly correlated
4 ZNF486 49 8.6 Weakly correlated
5 ZNF707 44 74.0 Weakly correlated
6 ZNF506 21 28.9 Moderately correlated
7 ZNF479 15 6.4 Weakly correlated
8 ZNF836 10 43.0 Highly correlated
9 ZNF793 10 99.0 Weakly correlated
10 ZNF723 7 15.2 Weakly correlated
11 ZNF263 7 180.0 Weakly correlated
12 ZIM3 5 87.0 Weakly correlated
13 ZNF534 5 19.6 Weakly correlated
14 ZNF528 4 43.0 Highly correlated
15 ZNF44 4 43.0 Highly correlated
16 ZNF468 3 28.9 Moderately correlated
17 ZNF317 2 99.0 Weakly correlated
18 ZNF320 2 28.9 Moderately correlated
19 ZNF471 2 94.0 Weakly correlated
20 ZNF735 2 28.9 Moderately correlated
21 ZNF680 2 28.9 Moderately correlated
22 ZNF485 1 94.0 Weakly correlated
23 ZNF41 1 99.0 Weakly correlated
24 ZNF597 1 94.0 Weakly correlated
25 ZNF101 1 43.0 Highly correlated
26 ZNF197 1 99.0 Weakly correlated
27 ZNF679 1 28.9 Moderately correlated
28 ZNF75D 1 94.0 Weakly correlated
29 ZNF808 1 19.6 Weakly correlated
30 ZNF766 1 43.0 Highly correlated
31 ZNF550 1 94.0 Weakly correlated
32 ZNF429 1 28.9 Moderately correlated
33 ZNF334 1 99.0 Weakly correlated
34 ZNF251 1 94.0 Weakly correlated
35 ZNF823 1 43.0 Highly correlated
36 ZNF684 1 99.0 Weakly correlated
37 ZNF382 1 99.0 Weakly correlated
38 ZNF175 1 94.0 Weakly correlated
39 ZNF483 1 99.0 Weakly correlated
40 ZNF417 1 28.9 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF486 8.6 Weakly correlated