ZRdb KZFP & Repeats
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LTR_MSTA

  • Name
    MSTA
  • Repbase
    MSTA
  • Type
    LTR
  • Emergence
    43.0 Mya
  • Dfam Id
    DF0001041
Description :

MSTA has 5 bp TSDs. This represents an intermediate subfamily betweenTHE1C and MSTB. Note that a full-length ERV-MaLR (Mammalian apparentLTR retrotransposon) element is derived from an ERV (EndogenousRetrovirus), but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgatatggtttggatctgtgtccccgcccaaatctcatgtcgaattgtaatccccagtgttggaggnggggcctggtgggaggtgattggatcatgggggcggatttctcatgancggtttagcaccatccccttggtgctgttctcgtgatagtgagtgagttctcacgagatctggttgtttaaaagtgtgtggcacctcccccctcgctctctcttnctcctgctccggccatgtgacgtgcctgcttccccttcgccttccgccatgattgtaagtttcctgaggcctccccagaagccgannagatgccancgccatgcttcctgtacagcctgcggaaccgtgagccaattaaacctcttttctttataaattacccagtctcaggtatttctttatagcagtgcgagaacggactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF679 5213 28.9 Moderately correlated
2 ZNF766 1773 43.0 Highly correlated
3 ZNF382 436 99.0 Weakly correlated
4 ZNF707 237 74.0 Weakly correlated
5 ZNF705B 223 28.9 Moderately correlated
6 ZNF28 202 28.9 Moderately correlated
7 ZNF267 168 43.0 Highly correlated
8 ZNF776 152 43.0 Highly correlated
9 ZNF479 144 6.4 Weakly correlated
10 ZNF534 142 19.6 Weakly correlated
11 ZNF263 141 180.0 Weakly correlated
12 ZNF705D 139 28.9 Moderately correlated
13 ZNF274 129 99.0 Weakly correlated
14 ZNF320 125 28.9 Moderately correlated
15 ZNF554 103 99.0 Weakly correlated
16 ZNF75D 103 94.0 Weakly correlated
17 ZNF723 75 15.2 Weakly correlated
18 ZNF251 74 94.0 Weakly correlated
19 ZIM3 73 87.0 Weakly correlated
20 ZNF175 73 94.0 Weakly correlated
21 ZNF793 73 99.0 Weakly correlated
22 ZNF680 69 28.9 Moderately correlated
23 ZNF18 68 160.0 Weakly correlated
24 ZNF589 67 28.9 Moderately correlated
25 ZNF394 64 99.0 Weakly correlated
26 ZFP69B 54 99.0 Weakly correlated
27 ZNF317 48 99.0 Weakly correlated
28 ZNF486 44 8.6 Weakly correlated
29 ZNF584 41 99.0 Weakly correlated
30 ZNF257 40 0.0 Weakly correlated
31 ZNF133 37 99.0 Weakly correlated
32 ZNF197 36 99.0 Weakly correlated
33 ZNF141 34 43.0 Highly correlated
34 ZNF485 34 94.0 Weakly correlated
35 ZNF490 34 43.0 Highly correlated
36 ZKSCAN8 33 160.0 Weakly correlated
37 ZNF597 33 94.0 Weakly correlated
38 ZKSCAN5 32 160.0 Weakly correlated
39 ZKSCAN1 30 160.0 Weakly correlated
40 ZNF92 29 28.9 Moderately correlated
41 ZNF585B 28 99.0 Weakly correlated
42 ZNF671 24 94.0 Weakly correlated
43 ZFP37 23 99.0 Weakly correlated
44 ZNF101 23 43.0 Highly correlated
45 ZNF558 23 99.0 Weakly correlated
46 ZNF701 23 28.9 Moderately correlated
47 ZNF468 21 28.9 Moderately correlated
48 ZNF2 20 99.0 Weakly correlated
49 ZNF816 20 28.9 Moderately correlated
50 ZNF169 19 94.0 Weakly correlated
51 ZNF735 19 28.9 Moderately correlated
52 ZNF202 18 160.0 Weakly correlated
53 ZNF429 18 28.9 Moderately correlated
54 ZNF510 17 99.0 Weakly correlated
55 ZNF33A 16 99.0 Weakly correlated
56 ZNF324 15 99.0 Weakly correlated
57 ZNF441 15 43.0 Highly correlated
58 ZNF44 13 43.0 Highly correlated
59 ZNF610 13 28.9 Moderately correlated
60 ZNF84 13 99.0 Weakly correlated
61 ZNF140 12 99.0 Weakly correlated
62 ZNF506 12 28.9 Moderately correlated
63 ZFP57 11 87.0 Weakly correlated
64 ZNF264 11 99.0 Weakly correlated
65 ZNF823 11 43.0 Highly correlated
66 ZNF41 10 99.0 Weakly correlated
67 ZNF586 10 43.0 Highly correlated
68 ZNF283 9 99.0 Weakly correlated
69 ZNF675 9 8.6 Weakly correlated
70 ZNF100 8 28.9 Moderately correlated
71 ZNF17 8 69.0 Weakly correlated
72 ZFP28 7 99.0 Weakly correlated
73 ZNF182 7 99.0 Weakly correlated
74 ZNF284 7 43.0 Highly correlated
75 ZNF343 7 74.0 Weakly correlated
76 ZNF350 7 99.0 Weakly correlated
77 ZNF682 7 28.9 Moderately correlated
78 ZNF8 7 99.0 Weakly correlated
79 ZNF530 6 28.9 Moderately correlated
80 ZNF160 5 74.0 Weakly correlated
81 ZNF248 5 99.0 Weakly correlated
82 ZNF337 5 43.0 Highly correlated
83 ZNF425 5 94.0 Weakly correlated
84 ZNF436 5 180.0 Weakly correlated
85 ZNF471 5 94.0 Weakly correlated
86 ZNF549 5 87.0 Weakly correlated
87 ZNF778 5 74.0 Weakly correlated
88 ZNF780A 5 43.0 Highly correlated
89 PRDM9 4 0.0 Weakly correlated
90 ZNF136 4 74.0 Weakly correlated
91 ZNF26 4 99.0 Weakly correlated
92 ZNF347 4 43.0 Highly correlated
93 ZNF519 4 19.6 Weakly correlated
94 ZNF528 4 43.0 Highly correlated
95 ZNF611 4 19.6 Weakly correlated
96 ZNF93 4 8.6 Weakly correlated
97 ZIK1 3 87.0 Weakly correlated
98 ZNF135 3 94.0 Weakly correlated
99 ZNF189 3 99.0 Weakly correlated
100 ZNF304 3 99.0 Weakly correlated
101 ZNF430 3 19.6 Weakly correlated
102 ZNF547 3 74.0 Weakly correlated
103 ZNF566 3 99.0 Weakly correlated
104 ZNF567 3 99.0 Weakly correlated
105 ZNF585A 3 99.0 Weakly correlated
106 ZNF677 3 99.0 Weakly correlated
107 ZNF684 3 99.0 Weakly correlated
108 ZNF114 2 28.9 Moderately correlated
109 ZNF124 2 43.0 Highly correlated
110 ZNF273 2 28.9 Moderately correlated
111 ZNF30 2 94.0 Weakly correlated
112 ZNF331 2 94.0 Weakly correlated
113 ZNF334 2 99.0 Weakly correlated
114 ZNF431 2 28.9 Moderately correlated
115 ZNF433 2 43.0 Highly correlated
116 ZNF440 2 28.9 Moderately correlated
117 ZNF562 2 28.9 Moderately correlated
118 ZNF563 2 28.9 Moderately correlated
119 ZNF57 2 28.9 Moderately correlated
120 ZNF596 2 94.0 Weakly correlated
121 ZNF695 2 28.9 Moderately correlated
122 ZNF777 2 319.0 Weakly correlated
123 ZNF786 2 99.0 Weakly correlated
124 ZNF789 2 99.0 Weakly correlated
125 ZNF792 2 94.0 Weakly correlated
126 ZNF808 2 19.6 Weakly correlated
127 ZFP14 1 99.0 Weakly correlated
128 ZFP90 1 99.0 Weakly correlated
129 ZNF10 1 99.0 Weakly correlated
130 ZNF157 1 99.0 Weakly correlated
131 ZNF177 1 94.0 Weakly correlated
132 ZNF205 1 180.0 Weakly correlated
133 ZNF222 1 43.0 Highly correlated
134 ZNF224 1 69.0 Weakly correlated
135 ZNF230 1 28.9 Moderately correlated
136 ZNF234 1 99.0 Weakly correlated
137 ZNF250 1 99.0 Weakly correlated
138 ZNF37A 1 99.0 Weakly correlated
139 ZNF461 1 99.0 Weakly correlated
140 ZNF480 1 43.0 Highly correlated
141 ZNF483 1 99.0 Weakly correlated
142 ZNF484 1 99.0 Weakly correlated
143 ZNF500 1 160.0 Weakly correlated
144 ZNF529 1 99.0 Weakly correlated
145 ZNF560 1 43.0 Highly correlated
146 ZNF564 1 74.0 Weakly correlated
147 ZNF573 1 94.0 Weakly correlated
148 ZNF605 1 99.0 Weakly correlated
149 ZNF607 1 43.0 Highly correlated
150 ZNF626 1 0.0 Weakly correlated
151 ZNF641 1 99.0 Weakly correlated
152 ZNF658 1 99.0 Weakly correlated
153 ZNF66 1 0.0 Weakly correlated
154 ZNF674 1 99.0 Weakly correlated
155 ZNF730 1 19.6 Weakly correlated
156 ZNF736 1 43.0 Highly correlated
157 ZNF75A 1 94.0 Weakly correlated
158 ZNF765 1 8.6 Weakly correlated
159 ZNF805 1 99.0 Weakly correlated
160 ZNF845 1 28.9 Moderately correlated
161 ZNF878 1 43.0 Highly correlated
162 ZNF879 1 99.0 Weakly correlated
163 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF679 5071 28.9 Moderately correlated
2 ZNF766 1026 43.0 Highly correlated
3 ZNF267 156 43.0 Highly correlated
4 ZNF776 137 43.0 Highly correlated
5 ZNF534 86 19.6 Weakly correlated
6 ZNF263 53 180.0 Weakly correlated
7 ZNF320 51 28.9 Moderately correlated
8 ZNF75D 47 94.0 Weakly correlated
9 ZNF705B 44 28.9 Moderately correlated
10 ZNF705D 42 28.9 Moderately correlated
11 ZNF723 32 15.2 Weakly correlated
12 ZKSCAN5 29 160.0 Weakly correlated
13 ZNF479 27 6.4 Weakly correlated
14 ZNF141 25 43.0 Highly correlated
15 ZNF133 22 99.0 Weakly correlated
16 ZNF671 21 94.0 Weakly correlated
17 ZFP69B 19 99.0 Weakly correlated
18 ZNF793 18 99.0 Weakly correlated
19 ZNF485 17 94.0 Weakly correlated
20 ZNF28 16 28.9 Moderately correlated
21 ZNF468 16 28.9 Moderately correlated
22 ZNF257 15 0.0 Weakly correlated
23 ZNF597 13 94.0 Weakly correlated
24 ZIM3 13 87.0 Weakly correlated
25 ZNF169 12 94.0 Weakly correlated
26 ZNF382 11 99.0 Weakly correlated
27 ZNF816 10 28.9 Moderately correlated
28 ZNF680 9 28.9 Moderately correlated
29 ZNF823 9 43.0 Highly correlated
30 ZNF283 8 99.0 Weakly correlated
31 ZNF101 7 43.0 Highly correlated
32 ZNF18 6 160.0 Weakly correlated
33 ZNF707 5 74.0 Weakly correlated
34 ZNF343 5 74.0 Weakly correlated
35 ZNF735 5 28.9 Moderately correlated
36 ZNF100 5 28.9 Moderately correlated
37 ZNF41 4 99.0 Weakly correlated
38 ZNF394 4 99.0 Weakly correlated
39 ZNF175 4 94.0 Weakly correlated
40 ZNF490 4 43.0 Highly correlated
41 ZNF429 4 28.9 Moderately correlated
42 ZNF554 3 99.0 Weakly correlated
43 PRDM9 3 0.0 Weakly correlated
44 ZFP57 3 87.0 Weakly correlated
45 ZNF140 3 99.0 Weakly correlated
46 ZNF274 3 99.0 Weakly correlated
47 ZNF584 3 99.0 Weakly correlated
48 ZNF701 3 28.9 Moderately correlated
49 ZNF430 3 19.6 Weakly correlated
50 ZNF589 3 28.9 Moderately correlated
51 ZNF780A 3 43.0 Highly correlated
52 ZNF549 3 87.0 Weakly correlated
53 ZNF596 2 94.0 Weakly correlated
54 ZNF585B 2 99.0 Weakly correlated
55 ZNF202 2 160.0 Weakly correlated
56 ZIK1 2 87.0 Weakly correlated
57 ZNF675 2 8.6 Weakly correlated
58 ZNF347 2 43.0 Highly correlated
59 ZNF189 2 99.0 Weakly correlated
60 ZNF677 2 99.0 Weakly correlated
61 ZNF566 2 99.0 Weakly correlated
62 ZNF684 2 99.0 Weakly correlated
63 ZNF44 2 43.0 Highly correlated
64 ZNF350 1 99.0 Weakly correlated
65 ZNF251 1 94.0 Weakly correlated
66 ZNF626 1 0.0 Weakly correlated
67 ZFP37 1 99.0 Weakly correlated
68 ZNF586 1 43.0 Highly correlated
69 ZNF197 1 99.0 Weakly correlated
70 ZKSCAN8 1 160.0 Weakly correlated
71 ZNF519 1 19.6 Weakly correlated
72 ZNF124 1 43.0 Highly correlated
73 ZNF304 1 99.0 Weakly correlated
74 ZNF486 1 8.6 Weakly correlated
75 ZNF264 1 99.0 Weakly correlated
76 ZNF510 1 99.0 Weakly correlated
77 ZNF33A 1 99.0 Weakly correlated
78 ZNF317 1 99.0 Weakly correlated
79 ZNF334 1 99.0 Weakly correlated
80 ZNF26 1 99.0 Weakly correlated
81 ZNF273 1 28.9 Moderately correlated
82 ZNF530 1 28.9 Moderately correlated
83 ZNF182 1 99.0 Weakly correlated
84 ZNF17 1 69.0 Weakly correlated
85 ZNF792 1 94.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP69B 99.0 Weakly correlated
2 ZKSCAN5 160.0 Weakly correlated
3 ZNF257 0.0 Weakly correlated
4 ZNF320 28.9 Moderately correlated
5 ZNF468 28.9 Moderately correlated
6 ZNF485 94.0 Weakly correlated
7 ZNF597 94.0 Weakly correlated
8 ZNF671 94.0 Weakly correlated
9 ZNF679 28.9 Moderately correlated
10 ZNF75D 94.0 Weakly correlated
11 ZNF823 43.0 Highly correlated