ZRdb KZFP & Repeats
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LTR_MST-INT

  • Name
    MST-INT
  • Repbase
    MST_I
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0001046
Description :

MST-int encodes an ORF (pos ~48..1469) derived from an ERVL-like GAGprotein. Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gaaaattggtaccgaggagtggggcattgctataaagatacctgaaaatgtggaagcggctttggaactgggtaacgggcagaggttggaagagtttggagggctcagaagaagacaggaagatgagggaaagtttggaacttcttagagactggttaaatggttgtgaccaaaatgctgatagtgatatggacagtgaagnccaggctgacgaggtctcagatggaaatgaggaacttattgggaactggagcaaaggtcacccntgttatgccttagcaaagaacttggctgcattgtgtccatgccctagggatctgtggaagtttgaacttaagagtgatgacttagggtatctggcggaagaaatttctaagcagcaaagcgttcaagatgtggcctggctgcttctaacagcctacgntcagatgcgggagcaaagaaatgacttaaagttggaacttatatttaaaagggaagcagagcgtaaaagtttggaaaatttgcagcctggccatgtggcagaaaagaaaaanccattttcaggagaggaattcaagcaggctgcggagcaaccacttgctagagagatttgcatgactaaaagggagccaagtgctaatanccaagacaatgggaaaaaggcctcgaaggcatttcagagatcttcgaggcagcccctcccatcacaggcccagaggcctaggaggaaagaatggtttcgtgggccaggcccagggccccgctgccctgcgcagcctcgggacactgctccccgcatcccggccgctccggctccagccgcggctcaaagggccccaggtacagctcgggccgccgcttcggagggcgcaagccataagccttggcggcttccacgtggtgttaagcctgcaggcgcacagaatgcaagagtgaaggaggcttggcagcctccgcctagatttcagaggatgtatgggaaagcctgggtgcccaggcagaagcctgctgcaggggcggagccctcacagagaacctctactagggcagtgccgaggggaaatgtggggttggagcccccacacagagtccccaccggggcactgcctagtggagctgtgggaagggggccaccgccctccagaccccagaatggtaganccaccggcagcttgcaccctgagcctggaaaagccgcaggcactcaactccaacccgtgagagcagccacgggggctgnaccctgcaaagccacaggggcggagctgcccaaggccttgggagcccaccccttgcaccagtgtgccctggatgcgggacatggagtcaaaggagattattttggagctttaagatttaatgactgccctgctgggtttcggacttgcgtggggcctgtagcccctttcttttggccgatttctcccttttggaatgggaatgtttacccaatgcctgtaccnccattgtatcttggaagtaaataacttgtttttgattttacaggctcataggtggaaggaacttgccttgtctcagatgagactttggactttggacttttgagttaatgctggaatgagttaagactttgggggactattgggaaggcatgattgtattttgcaatgtgagaaggacatgagatttgggggggccaggggcggaa
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF585B 39 99.0 Weakly correlated
2 ZNF486 22 8.6 Weakly correlated
3 ZNF675 20 8.6 Weakly correlated
4 ZNF586 17 43.0 Weakly correlated
5 ZNF547 12 74.0 Highly correlated
6 ZNF382 5 99.0 Weakly correlated
7 ZNF479 5 6.4 Weakly correlated
8 ZNF707 4 74.0 Highly correlated
9 ZNF765 4 8.6 Weakly correlated
10 ZNF766 3 43.0 Weakly correlated
11 ZNF558 3 99.0 Weakly correlated
12 ZNF506 3 28.9 Weakly correlated
13 ZNF705D 2 28.9 Weakly correlated
14 ZNF705B 2 28.9 Weakly correlated
15 ZNF679 2 28.9 Weakly correlated
16 ZNF723 2 15.2 Weakly correlated
17 ZNF778 2 74.0 Highly correlated
18 ZNF133 2 99.0 Weakly correlated
19 ZNF2 2 99.0 Weakly correlated
20 ZNF251 2 94.0 Weakly correlated
21 ZNF257 1 0.0 Weakly correlated
22 ZNF92 1 28.9 Weakly correlated
23 ZNF823 1 43.0 Weakly correlated
24 ZNF793 1 99.0 Weakly correlated
25 ZIM3 1 87.0 Weakly correlated
26 ZNF160 1 74.0 Highly correlated
27 ZNF189 1 99.0 Weakly correlated
28 ZNF254 1 43.0 Weakly correlated
29 ZNF468 1 28.9 Weakly correlated
30 ZNF274 1 99.0 Weakly correlated
31 ZNF701 1 28.9 Weakly correlated
32 ZNF682 1 28.9 Weakly correlated
33 ZNF680 1 28.9 Weakly correlated
34 ZNF28 1 28.9 Weakly correlated
35 ZNF334 1 99.0 Weakly correlated
36 ZNF394 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF585B 21 99.0 Weakly correlated
2 ZNF586 17 43.0 Weakly correlated
3 ZNF675 17 8.6 Weakly correlated
4 ZNF486 6 8.6 Weakly correlated
5 ZNF506 3 28.9 Weakly correlated
6 ZNF707 2 74.0 Highly correlated
7 ZNF479 1 6.4 Weakly correlated
8 ZNF723 1 15.2 Weakly correlated
9 ZNF251 1 94.0 Weakly correlated
10 ZNF133 1 99.0 Weakly correlated
11 ZNF334 1 99.0 Weakly correlated
12 ZNF468 1 28.9 Weakly correlated
13 ZNF28 1 28.9 Weakly correlated
14 ZNF382 1 99.0 Weakly correlated
15 ZNF92 1 28.9 Weakly correlated
16 ZNF701 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF585B 99.0 Weakly correlated