ZRdb KZFP & Repeats
...

LTR_MLT2F

  • Name
    MLT2F
  • Repbase
    MLT2F
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001038
Description :

MLT2F is an ERVL LTR. However, a related LTR was "absorbed" by a mobileRicksha DNA transposon; explaining this cross-Type homology. A segmentof of MLT2F (position ~177-366) shows roughly 80% identity to the codingportion of apoprotein exon 3 (APO IV).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtggctttgtaatgtgtcaacttggctaggctgaactacgtttcccagaattcccttccctgtatgtttccggttagggtgggccacaagaganattctgcgcgagatttggagggcggaagtgaagcagcagccatnttgtttttnatgctcggaaggtcggngcagggnccgcaggcgctnttgcagctcacgcacgttgtcgctnatctgctggctcacctcgttggcgtggggcagcagccgggcctgcagctgctccaccttcccctggatcctccttcagcttctccgactcctgggccaggtgtgtgtttagctccgtgacgaagggcgccagcttctcctgcaggacacccgcatcatcaaggtcggaggcagcgagagactgacacgggttccagtccgtcctcgtgggttccagctcgtgctcgtgggttccagcttgtccttgctctcccccacttcacatccatcttcccttcccgactgcctgccctgcggacttcaagctccagcatcagacgcaaagacaacagccttacagagactgcttaaccagctcccacaattgcgtaaggtcaaatccctgtaacaaatcccttattatatatatctcctagtggttctgcttctctgattgaaccctgactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 96 99.0 Highly correlated
2 ZNF766 59 43.0 Weakly correlated
3 ZNF263 35 180.0 Weakly correlated
4 ZNF394 32 99.0 Highly correlated
5 ZNF589 32 28.9 Weakly correlated
6 ZNF175 28 94.0 Moderately correlated
7 ZNF320 26 28.9 Weakly correlated
8 ZNF317 24 99.0 Highly correlated
9 ZFP37 21 99.0 Highly correlated
10 ZNF18 20 160.0 Weakly correlated
11 ZNF584 20 99.0 Highly correlated
12 ZNF558 18 99.0 Highly correlated
13 ZNF101 16 43.0 Weakly correlated
14 ZNF197 15 99.0 Highly correlated
15 ZNF479 15 6.4 Weakly correlated
16 ZNF2 14 99.0 Highly correlated
17 ZKSCAN1 14 160.0 Weakly correlated
18 ZNF679 13 28.9 Weakly correlated
19 ZNF723 12 15.2 Weakly correlated
20 ZNF680 12 28.9 Weakly correlated
21 ZNF610 12 28.9 Weakly correlated
22 ZNF554 12 99.0 Highly correlated
23 ZNF324 11 99.0 Highly correlated
24 ZNF257 11 0.0 Weakly correlated
25 ZKSCAN8 11 160.0 Weakly correlated
26 ZNF793 10 99.0 Highly correlated
27 ZNF534 9 19.6 Weakly correlated
28 ZNF701 9 28.9 Weakly correlated
29 ZNF597 9 94.0 Moderately correlated
30 ZNF75D 9 94.0 Moderately correlated
31 ZIM3 8 87.0 Moderately correlated
32 ZFP57 7 87.0 Moderately correlated
33 ZFP69B 7 99.0 Highly correlated
34 ZNF707 7 74.0 Weakly correlated
35 ZNF705B 6 28.9 Weakly correlated
36 ZNF528 6 43.0 Weakly correlated
37 ZNF490 6 43.0 Weakly correlated
38 ZNF485 6 94.0 Moderately correlated
39 ZNF705D 5 28.9 Weakly correlated
40 ZNF735 4 28.9 Weakly correlated
41 ZNF274 4 99.0 Highly correlated
42 ZNF93 3 8.6 Weakly correlated
43 ZNF506 3 28.9 Weakly correlated
44 ZNF33A 3 99.0 Highly correlated
45 ZNF140 3 99.0 Highly correlated
46 ZNF251 3 94.0 Moderately correlated
47 ZNF182 2 99.0 Highly correlated
48 ZNF585B 2 99.0 Highly correlated
49 ZNF28 2 28.9 Weakly correlated
50 ZNF573 2 94.0 Moderately correlated
51 ZNF141 2 43.0 Weakly correlated
52 ZNF559 2 74.0 Weakly correlated
53 ZNF677 2 99.0 Highly correlated
54 ZNF549 2 87.0 Moderately correlated
55 ZNF17 2 69.0 Weakly correlated
56 ZNF41 2 99.0 Highly correlated
57 ZNF792 2 94.0 Moderately correlated
58 ZNF100 2 28.9 Weakly correlated
59 ZNF808 2 19.6 Weakly correlated
60 ZNF684 2 99.0 Highly correlated
61 ZNF230 2 28.9 Weakly correlated
62 ZNF92 2 28.9 Weakly correlated
63 ZNF483 2 99.0 Highly correlated
64 ZNF157 1 99.0 Highly correlated
65 ZNF772 1 94.0 Moderately correlated
66 ZNF749 1 28.9 Weakly correlated
67 ZNF75A 1 94.0 Moderately correlated
68 ZNF12 1 99.0 Highly correlated
69 ZNF10 1 99.0 Highly correlated
70 ZNF674 1 99.0 Highly correlated
71 ZNF778 1 74.0 Weakly correlated
72 ZNF780A 1 43.0 Weakly correlated
73 ZNF786 1 99.0 Highly correlated
74 ZNF789 1 99.0 Highly correlated
75 ZNF878 1 43.0 Weakly correlated
76 ZNF8 1 99.0 Highly correlated
77 ZNF91 1 6.0 Weakly correlated
78 ZFP82 1 99.0 Highly correlated
79 ZNF354A 1 99.0 Highly correlated
80 ZNF445 1 99.0 Highly correlated
81 ZNF436 1 180.0 Weakly correlated
82 ZNF486 1 8.6 Weakly correlated
83 ZNF430 1 19.6 Weakly correlated
84 ZNF429 1 28.9 Weakly correlated
85 ZNF519 1 19.6 Weakly correlated
86 ZNF425 1 94.0 Moderately correlated
87 ZNF530 1 28.9 Weakly correlated
88 ZNF547 1 74.0 Weakly correlated
89 ZNF37A 1 99.0 Highly correlated
90 ZNF282 1 319.0 Weakly correlated
91 ZNF563 1 28.9 Weakly correlated
92 ZNF565 1 99.0 Highly correlated
93 ZNF350 1 99.0 Highly correlated
94 ZNF585A 1 99.0 Highly correlated
95 ZNF347 1 43.0 Weakly correlated
96 ZNF596 1 94.0 Moderately correlated
97 ZNF626 1 0.0 Weakly correlated
98 ZNF671 1 94.0 Moderately correlated
99 ZNF44 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 8 6.4 Weakly correlated
2 ZNF320 7 28.9 Weakly correlated
3 ZNF723 7 15.2 Weakly correlated
4 ZNF534 7 19.6 Weakly correlated
5 ZIM3 5 87.0 Moderately correlated
6 ZNF263 4 180.0 Weakly correlated
7 ZNF680 4 28.9 Weakly correlated
8 ZNF257 4 0.0 Weakly correlated
9 ZNF18 3 160.0 Weakly correlated
10 ZNF75D 3 94.0 Moderately correlated
11 ZNF490 3 43.0 Weakly correlated
12 ZNF317 3 99.0 Highly correlated
13 ZFP57 3 87.0 Moderately correlated
14 ZNF485 3 94.0 Moderately correlated
15 ZNF101 3 43.0 Weakly correlated
16 ZNF735 2 28.9 Weakly correlated
17 ZNF483 2 99.0 Highly correlated
18 ZNF554 2 99.0 Highly correlated
19 ZFP37 2 99.0 Highly correlated
20 ZNF141 2 43.0 Weakly correlated
21 ZNF382 2 99.0 Highly correlated
22 ZNF701 2 28.9 Weakly correlated
23 ZNF597 1 94.0 Moderately correlated
24 ZNF274 1 99.0 Highly correlated
25 ZNF778 1 74.0 Weakly correlated
26 ZNF347 1 43.0 Weakly correlated
27 ZNF596 1 94.0 Moderately correlated
28 ZNF93 1 8.6 Weakly correlated
29 ZKSCAN8 1 160.0 Weakly correlated
30 ZNF100 1 28.9 Weakly correlated
31 ZNF589 1 28.9 Weakly correlated
32 ZNF674 1 99.0 Highly correlated
33 ZNF677 1 99.0 Highly correlated
34 ZNF558 1 99.0 Highly correlated
35 ZNF506 1 28.9 Weakly correlated
36 ZNF28 1 28.9 Weakly correlated
37 ZNF793 1 99.0 Highly correlated
38 ZNF789 1 99.0 Highly correlated
39 ZNF530 1 28.9 Weakly correlated
40 ZNF33A 1 99.0 Highly correlated
41 ZNF684 1 99.0 Highly correlated
42 ZNF610 1 28.9 Weakly correlated
43 ZNF436 1 180.0 Weakly correlated
44 ZNF549 1 87.0 Moderately correlated
45 ZNF573 1 94.0 Moderately correlated
46 ZNF528 1 43.0 Weakly correlated
47 ZNF75A 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats