ZRdb KZFP & Repeats
...

LTR_MLT2E

  • Name
    MLT2E
  • Repbase
    MLT2E
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001037
Description :

MLT2E is an ERVL LTR. However, a related LTR was "absorbed" by a mobileRicksha DNA transposon; explaining this cross-Type homology.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgctggattgtnctgttgtcaacttggttaagctgggaactacgtttcccagaatccccttccctgtatggttctgggttagagttggccaaagaggaacttgcgcgagatttgggaggcggaagtgaagcagcagccattactctctgaaggtcgtcgcggtcagacgcggtgagagacagacgcagaggtgcccagcgggttccagcttgtcctcgctctcccccgctccgcgtccagctcttcttcccgactgccggccctgctgaccaacagcggccccaggcccaccaccagacgcttggctgcggacccacagaggcggtagccacgcagaggcaacagctttccatagacctctccacnagctccccttcatggtcccacttcagcggctggacgtgcctggcttctcagatttccccgcaagctccgactcgtccacccgcgccagtgcttcaggaggggctggttagtgactttctctgatcctccaactcccccttccagaccttcacttccccagctcctcccacaattgtgtaaggtctaattcctataataaatcccttatcccataacactcatagtggctctgcttccctgactgaaccctgactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 10 99.0 Highly correlated
2 ZNF766 9 43.0 Weakly correlated
3 ZIM3 8 87.0 Moderately correlated
4 ZNF589 6 28.9 Weakly correlated
5 ZNF175 6 94.0 Moderately correlated
6 ZNF680 5 28.9 Weakly correlated
7 ZNF197 5 99.0 Highly correlated
8 ZNF554 4 99.0 Highly correlated
9 ZKSCAN8 4 160.0 Weakly correlated
10 ZFP37 4 99.0 Highly correlated
11 ZNF394 4 99.0 Highly correlated
12 ZNF584 4 99.0 Highly correlated
13 ZNF263 4 180.0 Weakly correlated
14 ZNF528 3 43.0 Weakly correlated
15 ZNF597 3 94.0 Moderately correlated
16 ZKSCAN1 3 160.0 Weakly correlated
17 ZNF2 2 99.0 Highly correlated
18 ZNF257 2 0.0 Weakly correlated
19 ZNF251 2 94.0 Moderately correlated
20 ZNF723 2 15.2 Weakly correlated
21 ZNF479 2 6.4 Weakly correlated
22 ZNF101 2 43.0 Weakly correlated
23 ZNF701 1 28.9 Weakly correlated
24 ZNF705D 1 28.9 Weakly correlated
25 ZNF780A 1 43.0 Weakly correlated
26 ZNF707 1 74.0 Weakly correlated
27 ZNF483 1 99.0 Highly correlated
28 ZNF793 1 99.0 Highly correlated
29 ZNF816 1 28.9 Weakly correlated
30 ZNF8 1 99.0 Highly correlated
31 ZNF91 1 6.0 Weakly correlated
32 ZNF92 1 28.9 Weakly correlated
33 ZNF679 1 28.9 Weakly correlated
34 ZNF563 1 28.9 Weakly correlated
35 ZNF558 1 99.0 Highly correlated
36 ZNF490 1 43.0 Weakly correlated
37 ZNF440 1 28.9 Weakly correlated
38 ZNF324 1 99.0 Highly correlated
39 ZNF317 1 99.0 Highly correlated
40 ZNF273 1 28.9 Weakly correlated
41 ZNF18 1 160.0 Weakly correlated
42 ZNF141 1 43.0 Weakly correlated
43 ZNF12 1 99.0 Highly correlated
44 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 4 87.0 Moderately correlated
2 ZNF479 2 6.4 Weakly correlated
3 ZNF597 2 94.0 Moderately correlated
4 ZNF141 1 43.0 Weakly correlated
5 ZNF197 1 99.0 Highly correlated
6 ZNF18 1 160.0 Weakly correlated
7 ZNF490 1 43.0 Weakly correlated
8 ZNF257 1 0.0 Weakly correlated
9 ZNF440 1 28.9 Weakly correlated
10 ZNF251 1 94.0 Moderately correlated
11 ZNF263 1 180.0 Weakly correlated
12 ZNF317 1 99.0 Highly correlated
13 ZNF584 1 99.0 Highly correlated
14 ZNF680 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats