ZRdb KZFP & Repeats
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LTR_MLT2D

  • Name
    MLT2D
  • Repbase
    MLT2D
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001036
Description :

MLT2D is an ERVL LTR. However, a related LTR was "absorbed" by a mobileRicksha DNA transposon; explaining this cross-Type homology.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatggttaattttatgtgtcaacttggctaggccacggtgcccagatatttggtcaaacattantctggatgtttctgtgaaggtattttttagatgagattaacatttaaatcagtagactttgagtaaagcagattaccctccataatgtgggtgggcctcatccaatcagttgaaggccttaagagaaaaagactganntcccccgaggaagagggaattctgccnncagactgccttcggactcgagctgcaacatcaactcttccctgggtctccagcctgccggcctaccctgcagattttggacttgccagcctccacaatcgcgtgagccaattccttaaaataaatctctctctacacacatcctattggttctgtttctctggagaaccctgactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 107 99.0 Highly correlated
2 ZNF766 50 43.0 Weakly correlated
3 ZFP37 37 99.0 Highly correlated
4 ZNF394 36 99.0 Highly correlated
5 ZNF705B 36 28.9 Weakly correlated
6 ZNF17 33 69.0 Weakly correlated
7 ZNF324 31 99.0 Highly correlated
8 ZNF263 28 180.0 Weakly correlated
9 ZNF175 26 94.0 Moderately correlated
10 ZNF705D 26 28.9 Weakly correlated
11 ZNF589 25 28.9 Weakly correlated
12 ZNF2 23 99.0 Highly correlated
13 ZNF679 22 28.9 Weakly correlated
14 ZFP69B 20 99.0 Highly correlated
15 ZNF534 20 19.6 Weakly correlated
16 ZNF680 20 28.9 Weakly correlated
17 ZNF723 20 15.2 Weakly correlated
18 ZNF317 18 99.0 Highly correlated
19 ZNF18 17 160.0 Weakly correlated
20 ZNF547 16 74.0 Weakly correlated
21 ZNF558 14 99.0 Highly correlated
22 ZNF92 14 28.9 Weakly correlated
23 ZNF584 13 99.0 Highly correlated
24 ZNF101 12 43.0 Weakly correlated
25 ZNF197 12 99.0 Highly correlated
26 ZNF793 12 99.0 Highly correlated
27 ZNF564 11 74.0 Weakly correlated
28 ZNF8 11 99.0 Highly correlated
29 ZKSCAN1 10 160.0 Weakly correlated
30 ZKSCAN8 10 160.0 Weakly correlated
31 ZNF169 10 94.0 Moderately correlated
32 ZNF479 10 6.4 Weakly correlated
33 ZNF75D 10 94.0 Moderately correlated
34 ZIM3 8 87.0 Moderately correlated
35 ZNF554 7 99.0 Highly correlated
36 ZNF701 7 28.9 Weakly correlated
37 ZNF792 7 94.0 Moderately correlated
38 ZNF140 6 99.0 Highly correlated
39 ZNF251 5 94.0 Moderately correlated
40 ZNF610 5 28.9 Weakly correlated
41 ZNF257 4 0.0 Weakly correlated
42 ZNF677 4 99.0 Highly correlated
43 ZNF133 3 99.0 Highly correlated
44 ZNF182 3 99.0 Highly correlated
45 ZNF273 3 28.9 Weakly correlated
46 ZNF274 3 99.0 Highly correlated
47 ZNF320 3 28.9 Weakly correlated
48 ZNF331 3 94.0 Moderately correlated
49 ZNF3 3 160.0 Weakly correlated
50 ZNF486 3 8.6 Weakly correlated
51 ZNF506 3 28.9 Weakly correlated
52 ZNF528 3 43.0 Weakly correlated
53 ZNF778 3 74.0 Weakly correlated
54 ZNF823 3 43.0 Weakly correlated
55 ZNF135 2 94.0 Moderately correlated
56 ZNF211 2 94.0 Moderately correlated
57 ZNF264 2 99.0 Highly correlated
58 ZNF334 2 99.0 Highly correlated
59 ZNF33A 2 99.0 Highly correlated
60 ZNF425 2 94.0 Moderately correlated
61 ZNF440 2 28.9 Weakly correlated
62 ZNF519 2 19.6 Weakly correlated
63 ZNF549 2 87.0 Moderately correlated
64 ZNF563 2 28.9 Weakly correlated
65 ZNF585B 2 99.0 Highly correlated
66 ZNF597 2 94.0 Moderately correlated
67 ZNF671 2 94.0 Moderately correlated
68 ZNF707 2 74.0 Weakly correlated
69 ZNF735 2 28.9 Weakly correlated
70 ZNF799 2 43.0 Weakly correlated
71 ZKSCAN5 1 160.0 Weakly correlated
72 ZNF136 1 74.0 Weakly correlated
73 ZNF160 1 74.0 Weakly correlated
74 ZNF19 1 99.0 Highly correlated
75 ZNF202 1 160.0 Weakly correlated
76 ZNF222 1 43.0 Weakly correlated
77 ZNF248 1 99.0 Highly correlated
78 ZNF254 1 43.0 Weakly correlated
79 ZNF282 1 319.0 Weakly correlated
80 ZNF287 1 99.0 Highly correlated
81 ZNF28 1 28.9 Weakly correlated
82 ZNF354C 1 99.0 Highly correlated
83 ZNF41 1 99.0 Highly correlated
84 ZNF429 1 28.9 Weakly correlated
85 ZNF433 1 43.0 Weakly correlated
86 ZNF436 1 180.0 Weakly correlated
87 ZNF43 1 43.0 Weakly correlated
88 ZNF441 1 43.0 Weakly correlated
89 ZNF44 1 43.0 Weakly correlated
90 ZNF471 1 94.0 Moderately correlated
91 ZNF510 1 99.0 Highly correlated
92 ZNF562 1 28.9 Weakly correlated
93 ZNF567 1 99.0 Highly correlated
94 ZNF571 1 99.0 Highly correlated
95 ZNF573 1 94.0 Moderately correlated
96 ZNF641 1 99.0 Highly correlated
97 ZNF675 1 8.6 Weakly correlated
98 ZNF684 1 99.0 Highly correlated
99 ZNF75A 1 94.0 Moderately correlated
100 ZNF761 1 19.6 Weakly correlated
101 ZNF765 1 8.6 Weakly correlated
102 ZNF780A 1 43.0 Weakly correlated
103 ZNF808 1 19.6 Weakly correlated
104 ZNF91 1 6.0 Weakly correlated
105 ZNF93 1 8.6 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF564 10 74.0 Weakly correlated
2 ZNF766 9 43.0 Weakly correlated
3 ZNF705D 9 28.9 Weakly correlated
4 ZNF17 9 69.0 Weakly correlated
5 ZNF705B 6 28.9 Weakly correlated
6 ZNF723 6 15.2 Weakly correlated
7 ZNF75D 5 94.0 Moderately correlated
8 ZNF479 5 6.4 Weakly correlated
9 ZNF263 5 180.0 Weakly correlated
10 ZNF793 5 99.0 Highly correlated
11 ZNF679 4 28.9 Weakly correlated
12 ZNF792 3 94.0 Moderately correlated
13 ZNF382 3 99.0 Highly correlated
14 ZNF101 3 43.0 Weakly correlated
15 ZNF534 3 19.6 Weakly correlated
16 ZNF677 3 99.0 Highly correlated
17 ZNF169 3 94.0 Moderately correlated
18 ZIM3 2 87.0 Moderately correlated
19 ZNF701 2 28.9 Weakly correlated
20 ZNF680 2 28.9 Weakly correlated
21 ZNF18 2 160.0 Weakly correlated
22 ZNF547 2 74.0 Weakly correlated
23 ZNF92 2 28.9 Weakly correlated
24 ZFP37 2 99.0 Highly correlated
25 ZNF823 2 43.0 Weakly correlated
26 ZNF735 1 28.9 Weakly correlated
27 ZNF440 1 28.9 Weakly correlated
28 ZKSCAN5 1 160.0 Weakly correlated
29 ZNF133 1 99.0 Highly correlated
30 ZNF140 1 99.0 Highly correlated
31 ZNF675 1 8.6 Weakly correlated
32 ZNF589 1 28.9 Weakly correlated
33 ZNF44 1 43.0 Weakly correlated
34 ZNF2 1 99.0 Highly correlated
35 ZNF273 1 28.9 Weakly correlated
36 ZNF671 1 94.0 Moderately correlated
37 ZNF597 1 94.0 Moderately correlated
38 ZNF254 1 43.0 Weakly correlated
39 ZNF433 1 43.0 Weakly correlated
40 ZNF528 1 43.0 Weakly correlated
41 ZNF780A 1 43.0 Weakly correlated
42 ZNF506 1 28.9 Weakly correlated
43 ZNF257 1 0.0 Weakly correlated
44 ZNF558 1 99.0 Highly correlated
45 ZNF610 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats