ZRdb KZFP & Repeats
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LTR_MLT2C2

  • Name
    MLT2C2
  • Repbase
    MLT2C2
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001035
Description :

MLT2C2 is an ERVL LTR. However, a related LTR was "absorbed" by a mobileRicksha DNA transposon; explaining this cross-Type homology.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatggttaattttatgtgtcaacttggctaggctatggtgcccagttgtttggtcaaacactagtctagatgttgctgtgaaggtattttttagatgtgattaacatttacaatcagtngactttgagtaaagcagattaccctccataatgtgggtgggcctcatccaatcagttgaaggccttaagagcaaagactgaggtttcccgaagaagaaggaattctgcctcaagactgcaacatagaaatcctgcctgagtttccagcctgctggcctgccctgcggatttcggactcaagactgcaacatcaactcttacctgaatttccagcctgccggcctgccctacagatttcggacttgccagcccccacaatcgcgtgagccaattccttaaaataaatctctctctacacatatcctattggttctgtttctctggagaaccctgactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 18 99.0 Highly correlated
2 ZNF394 12 99.0 Highly correlated
3 ZIM3 12 87.0 Moderately correlated
4 ZNF766 12 43.0 Weakly correlated
5 ZNF705B 8 28.9 Weakly correlated
6 ZNF251 8 94.0 Moderately correlated
7 ZNF705D 8 28.9 Weakly correlated
8 ZNF723 7 15.2 Weakly correlated
9 ZFP37 6 99.0 Highly correlated
10 ZNF589 6 28.9 Weakly correlated
11 ZNF680 6 28.9 Weakly correlated
12 ZNF2 5 99.0 Highly correlated
13 ZNF534 4 19.6 Weakly correlated
14 ZNF584 4 99.0 Highly correlated
15 ZNF317 4 99.0 Highly correlated
16 ZNF17 4 69.0 Weakly correlated
17 ZNF169 4 94.0 Moderately correlated
18 ZNF101 4 43.0 Weakly correlated
19 ZFP69B 4 99.0 Highly correlated
20 ZNF175 3 94.0 Moderately correlated
21 ZNF263 3 180.0 Weakly correlated
22 ZNF679 3 28.9 Weakly correlated
23 ZNF140 3 99.0 Highly correlated
24 ZNF671 3 94.0 Moderately correlated
25 ZNF564 3 74.0 Weakly correlated
26 ZNF92 3 28.9 Weakly correlated
27 ZFP28 2 99.0 Highly correlated
28 ZNF707 2 74.0 Weakly correlated
29 ZNF585A 2 99.0 Highly correlated
30 ZNF8 2 99.0 Highly correlated
31 ZNF597 2 94.0 Moderately correlated
32 ZNF616 2 43.0 Weakly correlated
33 ZNF792 2 94.0 Moderately correlated
34 ZFP57 2 87.0 Moderately correlated
35 ZNF479 2 6.4 Weakly correlated
36 ZNF44 2 43.0 Weakly correlated
37 ZNF554 2 99.0 Highly correlated
38 ZNF354C 2 99.0 Highly correlated
39 ZNF28 2 28.9 Weakly correlated
40 ZNF274 2 99.0 Highly correlated
41 ZNF772 1 94.0 Moderately correlated
42 ZNF157 1 99.0 Highly correlated
43 ZNF730 1 19.6 Weakly correlated
44 ZNF736 1 43.0 Weakly correlated
45 ZNF12 1 99.0 Highly correlated
46 ZNF257 1 0.0 Weakly correlated
47 ZNF780A 1 43.0 Weakly correlated
48 ZKSCAN1 1 160.0 Weakly correlated
49 ZNF823 1 43.0 Weakly correlated
50 ZFP14 1 99.0 Highly correlated
51 ZNF716 1 19.6 Weakly correlated
52 ZNF182 1 99.0 Highly correlated
53 ZNF18 1 160.0 Weakly correlated
54 ZNF701 1 28.9 Weakly correlated
55 ZNF441 1 43.0 Weakly correlated
56 ZNF613 1 99.0 Highly correlated
57 ZNF471 1 94.0 Moderately correlated
58 ZNF485 1 94.0 Moderately correlated
59 ZNF486 1 8.6 Weakly correlated
60 ZNF558 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF251 4 94.0 Moderately correlated
2 ZNF17 3 69.0 Weakly correlated
3 ZNF564 3 74.0 Weakly correlated
4 ZIM3 2 87.0 Moderately correlated
5 ZNF766 2 43.0 Weakly correlated
6 ZNF705D 2 28.9 Weakly correlated
7 ZNF317 2 99.0 Highly correlated
8 ZNF534 2 19.6 Weakly correlated
9 ZNF44 2 43.0 Weakly correlated
10 ZNF354C 2 99.0 Highly correlated
11 ZNF101 2 43.0 Weakly correlated
12 ZNF705B 1 28.9 Weakly correlated
13 ZNF394 1 99.0 Highly correlated
14 ZFP14 1 99.0 Highly correlated
15 ZNF92 1 28.9 Weakly correlated
16 ZNF140 1 99.0 Highly correlated
17 ZNF382 1 99.0 Highly correlated
18 ZNF257 1 0.0 Weakly correlated
19 ZNF479 1 6.4 Weakly correlated
20 ZNF169 1 94.0 Moderately correlated
21 ZNF792 1 94.0 Moderately correlated
22 ZNF707 1 74.0 Weakly correlated
23 ZNF671 1 94.0 Moderately correlated
24 ZNF584 1 99.0 Highly correlated
25 ZNF780A 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats