ZRdb KZFP & Repeats
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LTR_MLT2C1

  • Name
    MLT2C1
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001034
Description :

MLT2C1 is an ERVL LTR. However, a related LTR was "absorbed" by a mobileRicksha DNA transposon; explaining this cross-Type homology.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatggttagttttatgtgtcaacttggctaggctatagtacccagttatttaatcaaacactaatctaggtgttgctgtgaaggtattttgtagatgtggttaacatctacaatcagttgactttaagtaaaggagattaccctcgataatgtgggtgggcctcatccaatcagttgaaggccttaagagcaaaaactgaggtttcccggagaagaagaaattctgcctcaagactgcagcatcaactcctgcctgagtttccagcctgccggcctgccctacggatttcggacttgccagcccccacaatcgcgtgagccaattccttaaaataaatctctttctacacacatcctattggttctgtttctctggagaaccctgactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 46 99.0 Highly correlated
2 ZNF766 31 43.0 Weakly correlated
3 ZNF394 20 99.0 Highly correlated
4 ZNF263 18 180.0 Weakly correlated
5 ZNF705B 17 28.9 Weakly correlated
6 ZKSCAN1 16 160.0 Weakly correlated
7 ZNF707 15 74.0 Weakly correlated
8 ZNF589 12 28.9 Weakly correlated
9 ZNF175 12 94.0 Moderately correlated
10 ZNF2 12 99.0 Highly correlated
11 ZNF324 11 99.0 Highly correlated
12 ZNF701 11 28.9 Weakly correlated
13 ZNF75D 11 94.0 Moderately correlated
14 ZFP37 11 99.0 Highly correlated
15 ZNF679 10 28.9 Weakly correlated
16 ZIM3 10 87.0 Moderately correlated
17 ZFP69B 10 99.0 Highly correlated
18 ZNF723 9 15.2 Weakly correlated
19 ZNF317 9 99.0 Highly correlated
20 ZNF705D 9 28.9 Weakly correlated
21 ZNF479 8 6.4 Weakly correlated
22 ZNF793 7 99.0 Highly correlated
23 ZNF792 7 94.0 Moderately correlated
24 ZNF18 7 160.0 Weakly correlated
25 ZNF823 7 43.0 Weakly correlated
26 ZNF680 6 28.9 Weakly correlated
27 ZNF610 6 28.9 Weakly correlated
28 ZNF584 6 99.0 Highly correlated
29 ZNF251 5 94.0 Moderately correlated
30 ZNF564 5 74.0 Weakly correlated
31 ZNF534 5 19.6 Weakly correlated
32 ZNF133 5 99.0 Highly correlated
33 ZNF101 5 43.0 Weakly correlated
34 ZNF273 4 28.9 Weakly correlated
35 ZNF197 4 99.0 Highly correlated
36 ZNF558 4 99.0 Highly correlated
37 ZNF140 4 99.0 Highly correlated
38 ZNF554 4 99.0 Highly correlated
39 ZNF92 3 28.9 Weakly correlated
40 ZFP57 3 87.0 Moderately correlated
41 ZKSCAN8 3 160.0 Weakly correlated
42 ZNF506 3 28.9 Weakly correlated
43 ZNF485 3 94.0 Moderately correlated
44 ZNF8 3 99.0 Highly correlated
45 ZNF257 3 0.0 Weakly correlated
46 ZNF735 2 28.9 Weakly correlated
47 ZNF671 2 94.0 Moderately correlated
48 ZNF641 2 99.0 Highly correlated
49 ZNF684 2 99.0 Highly correlated
50 ZNF695 2 28.9 Weakly correlated
51 ZNF799 2 43.0 Weakly correlated
52 ZNF490 2 43.0 Weakly correlated
53 ZNF274 2 99.0 Highly correlated
54 ZNF547 2 74.0 Weakly correlated
55 ZNF585B 2 99.0 Highly correlated
56 ZNF486 2 8.6 Weakly correlated
57 ZNF264 2 99.0 Highly correlated
58 ZNF461 2 99.0 Highly correlated
59 ZNF44 2 43.0 Weakly correlated
60 ZNF441 2 43.0 Weakly correlated
61 ZNF772 1 94.0 Moderately correlated
62 ZNF28 1 28.9 Weakly correlated
63 ZNF780A 1 43.0 Weakly correlated
64 ZNF786 1 99.0 Highly correlated
65 ZNF248 1 99.0 Highly correlated
66 ZNF182 1 99.0 Highly correlated
67 ZNF157 1 99.0 Highly correlated
68 ZNF141 1 43.0 Weakly correlated
69 ZNF114 1 28.9 Weakly correlated
70 ZNF93 1 8.6 Weakly correlated
71 ZNF26 1 99.0 Highly correlated
72 ZNF286A 1 160.0 Weakly correlated
73 ZNF334 1 99.0 Highly correlated
74 ZNF3 1 160.0 Weakly correlated
75 ZNF483 1 99.0 Highly correlated
76 ZNF528 1 43.0 Weakly correlated
77 ZNF543 1 99.0 Highly correlated
78 ZNF563 1 28.9 Weakly correlated
79 ZNF597 1 94.0 Moderately correlated
80 ZNF573 1 94.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF766 9 43.0 Weakly correlated
2 ZNF564 5 74.0 Weakly correlated
3 ZNF823 4 43.0 Weakly correlated
4 ZNF723 3 15.2 Weakly correlated
5 ZNF75D 3 94.0 Moderately correlated
6 ZNF506 3 28.9 Weakly correlated
7 ZIM3 3 87.0 Moderately correlated
8 ZNF101 3 43.0 Weakly correlated
9 ZNF641 2 99.0 Highly correlated
10 ZNF792 2 94.0 Moderately correlated
11 ZNF263 2 180.0 Weakly correlated
12 ZNF671 2 94.0 Moderately correlated
13 ZNF547 2 74.0 Weakly correlated
14 ZNF485 2 94.0 Moderately correlated
15 ZNF133 2 99.0 Highly correlated
16 ZNF684 2 99.0 Highly correlated
17 ZNF44 2 43.0 Weakly correlated
18 ZNF479 2 6.4 Weakly correlated
19 ZNF554 1 99.0 Highly correlated
20 ZNF793 1 99.0 Highly correlated
21 ZNF680 1 28.9 Weakly correlated
22 ZNF597 1 94.0 Moderately correlated
23 ZNF382 1 99.0 Highly correlated
24 ZNF705D 1 28.9 Weakly correlated
25 ZNF705B 1 28.9 Weakly correlated
26 ZNF558 1 99.0 Highly correlated
27 ZFP37 1 99.0 Highly correlated
28 ZNF610 1 28.9 Weakly correlated
29 ZNF780A 1 43.0 Weakly correlated
30 ZNF8 1 99.0 Highly correlated
31 ZNF394 1 99.0 Highly correlated
32 ZNF18 1 160.0 Weakly correlated
33 ZFP69B 1 99.0 Highly correlated
34 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats