ZRdb KZFP & Repeats
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LTR_MLT2B5

  • Name
    MLT2B5
  • Repbase
    MLT2B3
  • Type
    LTR
  • Emergence
    87.0 Mya
  • Dfam Id
    DF0001033
Description :

MLT2B5 is an ERVL LTR. However, a related LTR was "absorbed" by a mobileRicksha DNA transposon; explaining this cross-Type homology.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatggttgattttgggtgtcaacttgactggattaagggatacccagatagctggtaaagcattatttattctcaatcancgcatnaattattctcaatgcttcagtaggcactgagcccgtccctcttctgctgaaagggaaacccaggtggtttggcatttgattagaatgattgggctgccccaggtgtgtctgtgagggtgtttccggaggagattggcatgtgagtcggtggactgagtggggaagatccgccctcaatgtgggcgggcaccatccaatcggctgggggcccggatggaacaaaaaggcagaggaagggcgaattcttgcnctctctcttccggagccgggacgcccttcttctcctgcccttggacgtcagaactccaggttctccggcctttggactccgggacttgcaccagcggcccccgggctctcaggccttcggcctcggactgagnnactgngagttacaccatcggcttccctggttctnaggccttcggacttggactgagccacgccaccggcttccctggntctccagcttgcagatgcagncggcctatcgtgggacttctcagcctccgtaatcgcgtgagccaattcccctaataaatcccttctcatatatctntctatatatatatatatntntntatatatcctattggttctgtctctctggagaaccctgactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF735 8 28.9 Weakly correlated
2 ZNF382 7 99.0 Weakly correlated
3 ZFP37 4 99.0 Weakly correlated
4 ZNF723 4 15.2 Weakly correlated
5 ZNF263 4 180.0 Weakly correlated
6 ZNF705B 3 28.9 Weakly correlated
7 ZNF28 3 28.9 Weakly correlated
8 ZNF324 3 99.0 Weakly correlated
9 ZFP69B 2 99.0 Weakly correlated
10 ZNF558 2 99.0 Weakly correlated
11 ZNF554 2 99.0 Weakly correlated
12 ZNF679 2 28.9 Weakly correlated
13 ZNF479 2 6.4 Weakly correlated
14 ZNF2 2 99.0 Weakly correlated
15 ZNF169 2 94.0 Weakly correlated
16 ZNF101 2 43.0 Weakly correlated
17 ZKSCAN1 2 160.0 Weakly correlated
18 ZIM3 2 87.0 Highly correlated
19 ZNF793 1 99.0 Weakly correlated
20 ZNF808 1 19.6 Weakly correlated
21 ZNF705D 1 28.9 Weakly correlated
22 ZNF84 1 99.0 Weakly correlated
23 ZNF671 1 94.0 Weakly correlated
24 ZNF610 1 28.9 Weakly correlated
25 ZNF564 1 74.0 Moderately correlated
26 ZNF490 1 43.0 Weakly correlated
27 ZNF432 1 99.0 Weakly correlated
28 ZNF425 1 94.0 Weakly correlated
29 ZNF394 1 99.0 Weakly correlated
30 ZNF274 1 99.0 Weakly correlated
31 ZNF257 1 0.0 Weakly correlated
32 ZNF251 1 94.0 Weakly correlated
33 ZNF133 1 99.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF735 7 28.9 Weakly correlated
2 ZFP37 2 99.0 Weakly correlated
3 ZNF705B 2 28.9 Weakly correlated
4 ZKSCAN1 1 160.0 Weakly correlated
5 ZNF101 1 43.0 Weakly correlated
6 ZNF133 1 99.0 Weakly correlated
7 ZNF490 1 43.0 Weakly correlated
8 ZNF723 1 15.2 Weakly correlated
9 ZNF793 1 99.0 Weakly correlated
10 ZNF169 1 94.0 Weakly correlated
11 ZNF479 1 6.4 Weakly correlated
12 ZNF257 1 0.0 Weakly correlated
13 ZNF554 1 99.0 Weakly correlated
14 ZNF671 1 94.0 Weakly correlated
15 ZNF564 1 74.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF735 28.9 Weakly correlated