ZRdb KZFP & Repeats
...

LTR_MLT2B4

  • Name
    MLT2B4
  • Repbase
    MLT2B4
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001032
Description :

MLT2B4 is an ERVL LTR. However, a related LTR was "absorbed" by a mobileRicksha DNA transposon; explaining this cross-Type homology.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatggttaattttatgtgtcaacttgactgggccacggggtgcccagatatttggtcaaacattattctgggtgtgtctgtgagggtgtttctggnatgagattaacatttgaatcggtagactgagtaaagcagattgccctccctaatgtgggtgggcctcatccaatcagttgaaggcctgaatagaacaaaaaggctgaccctcccccgagtaagagggaattcctcctgcctgactgccttcgagctgggacatcggtctttttcctgccttcggactcgaactgaaacatcggctcttcctgggtctcgagcctgccggccttcggactggaactacaccatcggctctcctggttctcaggccttcggactcggactggaactacaccatcggctctcctgggtctccagcttgccgactcgnnntgcagatcttgggacttntcagcctccataatcgcgtgagccaattccttataataaatctctctcttntatatatataccacatcctattggttctgtttctctggagaaccctaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF17 275 69.0 Weakly correlated
2 ZNF382 76 99.0 Highly correlated
3 ZNF766 49 43.0 Weakly correlated
4 ZNF394 43 99.0 Highly correlated
5 ZNF793 43 99.0 Highly correlated
6 ZNF263 40 180.0 Weakly correlated
7 ZKSCAN1 26 160.0 Weakly correlated
8 ZNF175 25 94.0 Moderately correlated
9 ZNF680 23 28.9 Weakly correlated
10 ZFP37 22 99.0 Highly correlated
11 ZNF705B 22 28.9 Weakly correlated
12 ZNF317 20 99.0 Highly correlated
13 ZNF589 20 28.9 Weakly correlated
14 ZNF705D 19 28.9 Weakly correlated
15 ZNF28 18 28.9 Weakly correlated
16 ZNF273 17 28.9 Weakly correlated
17 ZNF584 17 99.0 Highly correlated
18 ZIM3 16 87.0 Moderately correlated
19 ZNF679 16 28.9 Weakly correlated
20 ZNF723 16 15.2 Weakly correlated
21 ZNF18 15 160.0 Weakly correlated
22 ZNF701 15 28.9 Weakly correlated
23 ZFP69B 14 99.0 Highly correlated
24 ZNF2 14 99.0 Highly correlated
25 ZNF534 14 19.6 Weakly correlated
26 ZNF479 13 6.4 Weakly correlated
27 ZNF554 13 99.0 Highly correlated
28 ZNF101 11 43.0 Weakly correlated
29 ZNF197 11 99.0 Highly correlated
30 ZKSCAN8 8 160.0 Weakly correlated
31 ZNF251 8 94.0 Moderately correlated
32 ZNF274 8 99.0 Highly correlated
33 ZNF324 8 99.0 Highly correlated
34 ZNF486 7 8.6 Weakly correlated
35 ZNF92 7 28.9 Weakly correlated
36 ZNF528 6 43.0 Weakly correlated
37 ZNF585B 6 99.0 Highly correlated
38 ZNF671 6 94.0 Moderately correlated
39 ZNF707 6 74.0 Weakly correlated
40 ZNF792 6 94.0 Moderately correlated
41 ZNF485 5 94.0 Moderately correlated
42 ZNF558 5 99.0 Highly correlated
43 ZNF610 5 28.9 Weakly correlated
44 ZNF75D 5 94.0 Moderately correlated
45 ZNF169 4 94.0 Moderately correlated
46 ZNF331 4 94.0 Moderately correlated
47 ZNF547 4 74.0 Weakly correlated
48 ZNF641 4 99.0 Highly correlated
49 ZNF677 4 99.0 Highly correlated
50 ZNF823 4 43.0 Weakly correlated
51 ZNF8 4 99.0 Highly correlated
52 ZNF202 3 160.0 Weakly correlated
53 ZNF257 3 0.0 Weakly correlated
54 ZNF549 3 87.0 Moderately correlated
55 ZNF564 3 74.0 Weakly correlated
56 ZNF597 3 94.0 Moderately correlated
57 ZNF808 3 19.6 Weakly correlated
58 ZFP28 2 99.0 Highly correlated
59 ZNF182 2 99.0 Highly correlated
60 ZNF248 2 99.0 Highly correlated
61 ZNF33A 2 99.0 Highly correlated
62 ZNF441 2 43.0 Weakly correlated
63 ZNF468 2 28.9 Weakly correlated
64 ZNF506 2 28.9 Weakly correlated
65 ZNF560 2 43.0 Weakly correlated
66 ZNF735 2 28.9 Weakly correlated
67 ZNF93 2 8.6 Weakly correlated
68 ZFP30 1 99.0 Highly correlated
69 ZFP82 1 99.0 Highly correlated
70 ZNF133 1 99.0 Highly correlated
71 ZNF135 1 94.0 Moderately correlated
72 ZNF140 1 99.0 Highly correlated
73 ZNF264 1 99.0 Highly correlated
74 ZNF267 1 43.0 Weakly correlated
75 ZNF26 1 99.0 Highly correlated
76 ZNF282 1 319.0 Weakly correlated
77 ZNF304 1 99.0 Highly correlated
78 ZNF320 1 28.9 Weakly correlated
79 ZNF337 1 43.0 Weakly correlated
80 ZNF347 1 43.0 Weakly correlated
81 ZNF354C 1 99.0 Highly correlated
82 ZNF41 1 99.0 Highly correlated
83 ZNF429 1 28.9 Weakly correlated
84 ZNF436 1 180.0 Weakly correlated
85 ZNF439 1 8.6 Weakly correlated
86 ZNF445 1 99.0 Highly correlated
87 ZNF483 1 99.0 Highly correlated
88 ZNF510 1 99.0 Highly correlated
89 ZNF519 1 19.6 Weakly correlated
90 ZNF567 1 99.0 Highly correlated
91 ZNF573 1 94.0 Moderately correlated
92 ZNF578 1 15.2 Weakly correlated
93 ZNF599 1 99.0 Highly correlated
94 ZNF620 1 99.0 Highly correlated
95 ZNF667 1 99.0 Highly correlated
96 ZNF674 1 99.0 Highly correlated
97 ZNF682 1 28.9 Weakly correlated
98 ZNF684 1 99.0 Highly correlated
99 ZNF716 1 19.6 Weakly correlated
100 ZNF75A 1 94.0 Moderately correlated
101 ZNF772 1 94.0 Moderately correlated
102 ZNF780A 1 43.0 Weakly correlated
103 ZNF786 1 99.0 Highly correlated
104 ZNF81 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF17 142 69.0 Weakly correlated
2 ZNF793 28 99.0 Highly correlated
3 ZNF28 13 28.9 Weakly correlated
4 ZNF263 10 180.0 Weakly correlated
5 ZIM3 7 87.0 Moderately correlated
6 ZNF766 7 43.0 Weakly correlated
7 ZNF534 7 19.6 Weakly correlated
8 ZNF723 6 15.2 Weakly correlated
9 ZNF382 5 99.0 Highly correlated
10 ZNF680 5 28.9 Weakly correlated
11 ZNF677 4 99.0 Highly correlated
12 ZNF101 4 43.0 Weakly correlated
13 ZNF671 4 94.0 Moderately correlated
14 ZNF75D 3 94.0 Moderately correlated
15 ZNF18 3 160.0 Weakly correlated
16 ZNF564 3 74.0 Weakly correlated
17 ZNF479 3 6.4 Weakly correlated
18 ZNF202 2 160.0 Weakly correlated
19 ZNF528 2 43.0 Weakly correlated
20 ZNF197 2 99.0 Highly correlated
21 ZNF317 2 99.0 Highly correlated
22 ZNF701 2 28.9 Weakly correlated
23 ZNF705D 2 28.9 Weakly correlated
24 ZNF792 2 94.0 Moderately correlated
25 ZNF589 2 28.9 Weakly correlated
26 ZNF585B 2 99.0 Highly correlated
27 ZNF705B 2 28.9 Weakly correlated
28 ZNF485 2 94.0 Moderately correlated
29 ZFP69B 2 99.0 Highly correlated
30 ZNF251 1 94.0 Moderately correlated
31 ZNF324 1 99.0 Highly correlated
32 ZNF584 1 99.0 Highly correlated
33 ZNF547 1 74.0 Weakly correlated
34 ZNF735 1 28.9 Weakly correlated
35 ZFP37 1 99.0 Highly correlated
36 ZNF8 1 99.0 Highly correlated
37 ZNF780A 1 43.0 Weakly correlated
38 ZNF772 1 94.0 Moderately correlated
39 ZNF684 1 99.0 Highly correlated
40 ZNF140 1 99.0 Highly correlated
41 ZNF273 1 28.9 Weakly correlated
42 ZNF304 1 99.0 Highly correlated
43 ZNF257 1 0.0 Weakly correlated
44 ZNF549 1 87.0 Moderately correlated
45 ZNF354C 1 99.0 Highly correlated
46 ZNF468 1 28.9 Weakly correlated
47 ZNF554 1 99.0 Highly correlated
48 ZNF506 1 28.9 Weakly correlated
49 ZNF823 1 43.0 Weakly correlated
50 ZNF133 1 99.0 Highly correlated
51 ZNF337 1 43.0 Weakly correlated
52 ZNF707 1 74.0 Weakly correlated
53 ZNF169 1 94.0 Moderately correlated
54 ZNF248 1 99.0 Highly correlated
55 ZNF486 1 8.6 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF28 28.9 Weakly correlated