ZRdb KZFP & Repeats
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LTR_MLT2B3

  • Name
    MLT2B3
  • Repbase
    MLT2B3
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001031
Description :

MLT2B3 is an ERVL LTR. However, a related LTR was "absorbed" by a mobileRicksha DNA transposon; explaining this cross-Type homology. MLT2B3contains a 50bp insertion compared to the otherwise closely relatedMLT2B2 variant.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatggttaatattaggtgtcaacttgattggattgaaggatgccnagatagctggtaaagtattgtttctgggtgtgtctgtgagggtgttgccagaggagattaacatttgagtcagtggactgggagaggaagacccaccctcancgatgtgggtgggcaccatccaatcggctgccggcncggctagaacaaaaaggcagaggaagggcgaatttgctctctctcctggagctgggacacccttctcctcctgccctcggacatcaganctccaggttcttcggcctttggactctnggacttacaccagcggtttnccgggctctcgggccttcggccacagactgaaggctgcaccgtcggcttccctgcttttgaggctttnggactcggactgagccacgctaccggcttccctggctccccagcttgcagacggcctatcgtgggacttcncggccttcgtgatcgtgtgagccaattcccctaataaatcccctttatctatcctattagttctgtccctctggagaaccctgactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 89 99.0 Highly correlated
2 ZNF680 44 28.9 Weakly correlated
3 ZNF382 42 99.0 Highly correlated
4 ZNF766 40 43.0 Weakly correlated
5 ZNF705B 29 28.9 Weakly correlated
6 ZNF671 28 94.0 Moderately correlated
7 ZNF735 27 28.9 Weakly correlated
8 ZNF394 24 99.0 Highly correlated
9 ZNF317 21 99.0 Highly correlated
10 ZNF723 21 15.2 Weakly correlated
11 ZNF263 21 180.0 Weakly correlated
12 ZNF479 20 6.4 Weakly correlated
13 ZNF679 18 28.9 Weakly correlated
14 ZNF705D 18 28.9 Weakly correlated
15 ZNF534 17 19.6 Weakly correlated
16 ZFP37 17 99.0 Highly correlated
17 ZIM3 14 87.0 Moderately correlated
18 ZNF175 13 94.0 Moderately correlated
19 ZNF324 13 99.0 Highly correlated
20 ZNF589 12 28.9 Weakly correlated
21 ZNF75D 12 94.0 Moderately correlated
22 ZNF614 11 99.0 Highly correlated
23 ZKSCAN1 11 160.0 Weakly correlated
24 ZNF169 9 94.0 Moderately correlated
25 ZNF320 9 28.9 Weakly correlated
26 ZNF2 9 99.0 Highly correlated
27 ZKSCAN8 9 160.0 Weakly correlated
28 ZNF8 8 99.0 Highly correlated
29 ZFP69B 8 99.0 Highly correlated
30 ZNF101 8 43.0 Weakly correlated
31 ZNF585B 8 99.0 Highly correlated
32 ZNF584 7 99.0 Highly correlated
33 ZNF490 7 43.0 Weakly correlated
34 ZNF707 7 74.0 Weakly correlated
35 ZNF251 7 94.0 Moderately correlated
36 ZNF558 6 99.0 Highly correlated
37 ZNF701 6 28.9 Weakly correlated
38 ZNF506 6 28.9 Weakly correlated
39 ZNF485 6 94.0 Moderately correlated
40 ZNF18 6 160.0 Weakly correlated
41 ZNF778 6 74.0 Weakly correlated
42 ZNF597 5 94.0 Moderately correlated
43 ZNF528 5 43.0 Weakly correlated
44 ZNF547 5 74.0 Weakly correlated
45 ZNF274 5 99.0 Highly correlated
46 ZNF202 4 160.0 Weakly correlated
47 ZNF486 4 8.6 Weakly correlated
48 ZNF823 4 43.0 Weakly correlated
49 ZNF140 3 99.0 Highly correlated
50 ZNF133 3 99.0 Highly correlated
51 ZNF28 3 28.9 Weakly correlated
52 ZNF84 3 99.0 Highly correlated
53 ZNF786 3 99.0 Highly correlated
54 ZNF30 3 94.0 Moderately correlated
55 ZNF878 2 43.0 Weakly correlated
56 ZNF675 2 8.6 Weakly correlated
57 ZNF682 2 28.9 Weakly correlated
58 ZNF92 2 28.9 Weakly correlated
59 ZNF248 2 99.0 Highly correlated
60 ZNF554 2 99.0 Highly correlated
61 ZNF197 2 99.0 Highly correlated
62 ZNF257 2 0.0 Weakly correlated
63 ZNF264 2 99.0 Highly correlated
64 ZNF26 2 99.0 Highly correlated
65 ZNF471 2 94.0 Moderately correlated
66 ZNF182 2 99.0 Highly correlated
67 ZNF350 2 99.0 Highly correlated
68 ZNF429 2 28.9 Weakly correlated
69 ZNF808 1 19.6 Weakly correlated
70 ZNF189 1 99.0 Highly correlated
71 ZNF177 1 94.0 Moderately correlated
72 ZNF7 1 99.0 Highly correlated
73 PRDM9 1 0.0 Weakly correlated
74 ZNF816 1 28.9 Weakly correlated
75 ZNF81 1 99.0 Highly correlated
76 ZNF160 1 74.0 Weakly correlated
77 ZNF845 1 28.9 Weakly correlated
78 ZNF141 1 43.0 Weakly correlated
79 ZNF136 1 74.0 Weakly correlated
80 ZFP28 1 99.0 Highly correlated
81 ZNF567 1 99.0 Highly correlated
82 ZNF74 1 99.0 Highly correlated
83 ZNF284 1 43.0 Weakly correlated
84 ZNF347 1 43.0 Weakly correlated
85 ZNF700 1 28.9 Weakly correlated
86 ZNF695 1 28.9 Weakly correlated
87 ZNF436 1 180.0 Weakly correlated
88 ZNF441 1 43.0 Weakly correlated
89 ZNF468 1 28.9 Weakly correlated
90 ZNF616 1 43.0 Weakly correlated
91 ZNF510 1 99.0 Highly correlated
92 ZNF611 1 19.6 Weakly correlated
93 ZNF519 1 19.6 Weakly correlated
94 ZNF543 1 99.0 Highly correlated
95 ZNF565 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 50 99.0 Highly correlated
2 ZNF735 26 28.9 Weakly correlated
3 ZNF671 15 94.0 Moderately correlated
4 ZNF534 13 19.6 Weakly correlated
5 ZNF705B 12 28.9 Weakly correlated
6 ZNF680 8 28.9 Weakly correlated
7 ZNF75D 7 94.0 Moderately correlated
8 ZNF479 7 6.4 Weakly correlated
9 ZNF723 6 15.2 Weakly correlated
10 ZIM3 6 87.0 Moderately correlated
11 ZNF705D 6 28.9 Weakly correlated
12 ZNF263 5 180.0 Weakly correlated
13 ZNF169 5 94.0 Moderately correlated
14 ZNF506 4 28.9 Weakly correlated
15 ZNF528 3 43.0 Weakly correlated
16 ZNF823 3 43.0 Weakly correlated
17 ZNF485 3 94.0 Moderately correlated
18 ZNF320 2 28.9 Weakly correlated
19 ZNF597 2 94.0 Moderately correlated
20 ZNF317 2 99.0 Highly correlated
21 ZFP37 2 99.0 Highly correlated
22 ZNF28 1 28.9 Weakly correlated
23 PRDM9 1 0.0 Weakly correlated
24 ZNF26 1 99.0 Highly correlated
25 ZNF429 1 28.9 Weakly correlated
26 ZNF816 1 28.9 Weakly correlated
27 ZNF141 1 43.0 Weakly correlated
28 ZNF7 1 99.0 Highly correlated
29 ZNF471 1 94.0 Moderately correlated
30 ZNF18 1 160.0 Weakly correlated
31 ZNF701 1 28.9 Weakly correlated
32 ZNF614 1 99.0 Highly correlated
33 ZNF133 1 99.0 Highly correlated
34 ZFP69B 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF534 19.6 Weakly correlated
2 ZNF671 94.0 Moderately correlated
3 ZNF735 28.9 Weakly correlated
4 ZNF75D 94.0 Moderately correlated