ZRdb KZFP & Repeats
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LTR_MLT2B2

  • Name
    MLT2B2
  • Repbase
    MLT2B2
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001030
Description :

MLT2B2 is an ERVL LTR. However, a related LTR was "absorbed" by a mobileRicksha DNA transposon; explaining this cross-Type homology.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatggttaattttatgtgtcaacttgactgggctaagggatgcccagatagctggtaaaacattatttctgggtgtgtctgtgagggtgtttccggaagagattagcatttgaatcagtagactgagtaaagaagatccgccctcaccaatgtgggcgggcatcatccaatccgttgagggcccgaatagaacaaaaaggcggaggaagggcgaattcnctctctcttcttgagctgggacatccatcttctcctgccctcggacatcggagctcctggttctcgggccttcggactccgggacttacaccagcggcccccctggttctcaggccttcggactcggactgaattacaccaccggctttcctggttctccagcttgcagacggcanatcgtgggacttctcggcctccataatcgcgtgagccaattcccataataaatctcctcttatatatctctatatatcctattggttctgtttctctggagaaccctgactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 42 99.0 Highly correlated
2 ZNF793 23 99.0 Highly correlated
3 ZNF274 21 99.0 Highly correlated
4 ZNF680 19 28.9 Weakly correlated
5 ZNF317 17 99.0 Highly correlated
6 ZNF766 17 43.0 Weakly correlated
7 ZNF705D 16 28.9 Weakly correlated
8 ZNF705B 16 28.9 Weakly correlated
9 ZNF589 15 28.9 Weakly correlated
10 ZNF175 14 94.0 Moderately correlated
11 ZNF707 13 74.0 Weakly correlated
12 ZNF394 13 99.0 Highly correlated
13 ZKSCAN8 12 160.0 Weakly correlated
14 ZNF723 10 15.2 Weakly correlated
15 ZNF263 10 180.0 Weakly correlated
16 ZNF584 10 99.0 Highly correlated
17 ZNF490 10 43.0 Weakly correlated
18 ZNF169 9 94.0 Moderately correlated
19 ZNF534 8 19.6 Weakly correlated
20 ZIM3 7 87.0 Moderately correlated
21 ZNF197 7 99.0 Highly correlated
22 ZNF479 6 6.4 Weakly correlated
23 ZNF735 6 28.9 Weakly correlated
24 ZNF320 6 28.9 Weakly correlated
25 ZNF101 6 43.0 Weakly correlated
26 ZNF331 5 94.0 Moderately correlated
27 ZNF2 5 99.0 Highly correlated
28 ZKSCAN1 5 160.0 Weakly correlated
29 ZNF18 5 160.0 Weakly correlated
30 ZNF17 5 69.0 Weakly correlated
31 ZNF597 4 94.0 Moderately correlated
32 ZNF679 4 28.9 Weakly correlated
33 ZNF701 3 28.9 Weakly correlated
34 ZNF140 3 99.0 Highly correlated
35 ZNF26 2 99.0 Highly correlated
36 ZNF563 2 28.9 Weakly correlated
37 ZNF8 2 99.0 Highly correlated
38 ZNF485 2 94.0 Moderately correlated
39 ZNF441 2 43.0 Weakly correlated
40 ZNF440 2 28.9 Weakly correlated
41 ZFP37 2 99.0 Highly correlated
42 ZNF41 2 99.0 Highly correlated
43 ZNF786 2 99.0 Highly correlated
44 ZNF350 2 99.0 Highly correlated
45 ZNF264 2 99.0 Highly correlated
46 ZNF671 1 94.0 Moderately correlated
47 ZNF792 1 94.0 Moderately correlated
48 ZNF614 1 99.0 Highly correlated
49 ZNF75D 1 94.0 Moderately correlated
50 ZNF585B 1 99.0 Highly correlated
51 ZNF585A 1 99.0 Highly correlated
52 ZNF420 1 94.0 Moderately correlated
53 ZNF92 1 28.9 Weakly correlated
54 ZNF28 1 28.9 Weakly correlated
55 ZFP57 1 87.0 Moderately correlated
56 ZFP69B 1 99.0 Highly correlated
57 ZNF133 1 99.0 Highly correlated
58 ZNF136 1 74.0 Weakly correlated
59 ZNF141 1 43.0 Weakly correlated
60 ZNF202 1 160.0 Weakly correlated
61 ZNF214 1 99.0 Highly correlated
62 ZNF251 1 94.0 Moderately correlated
63 ZNF257 1 0.0 Weakly correlated
64 ZNF283 1 99.0 Highly correlated
65 ZNF562 1 28.9 Weakly correlated
66 ZNF334 1 99.0 Highly correlated
67 ZNF33A 1 99.0 Highly correlated
68 ZNF354C 1 99.0 Highly correlated
69 ZNF425 1 94.0 Moderately correlated
70 ZNF471 1 94.0 Moderately correlated
71 ZNF506 1 28.9 Weakly correlated
72 ZNF519 1 19.6 Weakly correlated
73 ZNF554 1 99.0 Highly correlated
74 ZNF558 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF793 15 99.0 Highly correlated
2 ZNF705B 7 28.9 Weakly correlated
3 ZNF680 6 28.9 Weakly correlated
4 ZNF705D 6 28.9 Weakly correlated
5 ZNF735 6 28.9 Weakly correlated
6 ZNF534 6 19.6 Weakly correlated
7 ZNF490 5 43.0 Weakly correlated
8 ZNF169 5 94.0 Moderately correlated
9 ZNF723 4 15.2 Weakly correlated
10 ZIM3 4 87.0 Moderately correlated
11 ZNF589 3 28.9 Weakly correlated
12 ZNF597 3 94.0 Moderately correlated
13 ZNF175 3 94.0 Moderately correlated
14 ZNF317 3 99.0 Highly correlated
15 ZNF485 2 94.0 Moderately correlated
16 ZNF707 2 74.0 Weakly correlated
17 ZNF320 2 28.9 Weakly correlated
18 ZNF197 2 99.0 Highly correlated
19 ZNF263 2 180.0 Weakly correlated
20 ZNF786 1 99.0 Highly correlated
21 ZKSCAN8 1 160.0 Weakly correlated
22 ZNF17 1 69.0 Weakly correlated
23 ZNF140 1 99.0 Highly correlated
24 ZNF766 1 43.0 Weakly correlated
25 ZNF28 1 28.9 Weakly correlated
26 ZNF701 1 28.9 Weakly correlated
27 ZNF479 1 6.4 Weakly correlated
28 ZNF331 1 94.0 Moderately correlated
29 ZNF382 1 99.0 Highly correlated
30 ZNF350 1 99.0 Highly correlated
31 ZNF584 1 99.0 Highly correlated
32 ZNF671 1 94.0 Moderately correlated
33 ZNF440 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF735 28.9 Weakly correlated