ZRdb KZFP & Repeats
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LTR_MLT2B1

  • Name
    MLT2B1
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001029
Description :

MLT2B1 is an ERVL LTR. However, a related LTR was "absorbed" by a mobileRicksha DNA transposon; explaining this cross-Type homology.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatggttaattttatgtgtcaacttgactgggccangggatgcccagatagctggtnaaacattatttctgggtgtgtctgtgagggtgtttccggaagagattagcatttgaatcggtagactgagtaaagnagatcgccctccccaatgtgggtgggcatcatccaatccgttgagggcctgaatagaacaaaaaggcggaggaagggngaattcgctctctctgcttgagctgggacatccgtcttctcctgccctcggacatcggcgctcctggttctcgggccttcggactcggactgggacttacaccatcggctcccctggttctcaggccttcggactcggactggaactacaccaccggctttcctgggtctccagcttgcagacggcagatcgtgggacttctcagcctccataatcgcgtgagccaattcctcataataaatctctttctatatatctatatatatcctattggttctgtttctctggagaaccctgactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF17 66 69.0 Weakly correlated
2 ZNF382 49 99.0 Highly correlated
3 ZNF263 42 180.0 Weakly correlated
4 ZNF766 35 43.0 Weakly correlated
5 ZNF680 32 28.9 Weakly correlated
6 ZNF679 25 28.9 Weakly correlated
7 ZNF705B 24 28.9 Weakly correlated
8 ZNF317 24 99.0 Highly correlated
9 ZNF723 17 15.2 Weakly correlated
10 ZNF394 16 99.0 Highly correlated
11 ZNF589 15 28.9 Weakly correlated
12 ZNF175 15 94.0 Moderately correlated
13 ZNF705D 14 28.9 Weakly correlated
14 ZIM3 14 87.0 Moderately correlated
15 ZNF793 14 99.0 Highly correlated
16 ZFP37 12 99.0 Highly correlated
17 ZNF479 11 6.4 Weakly correlated
18 ZNF534 11 19.6 Weakly correlated
19 ZNF28 11 28.9 Weakly correlated
20 ZNF486 9 8.6 Weakly correlated
21 ZNF584 8 99.0 Highly correlated
22 ZNF554 8 99.0 Highly correlated
23 ZNF251 7 94.0 Moderately correlated
24 ZKSCAN8 7 160.0 Weakly correlated
25 ZNF140 7 99.0 Highly correlated
26 ZNF490 6 43.0 Weakly correlated
27 ZNF75D 6 94.0 Moderately correlated
28 ZKSCAN1 6 160.0 Weakly correlated
29 ZNF701 6 28.9 Weakly correlated
30 ZNF197 5 99.0 Highly correlated
31 ZNF2 5 99.0 Highly correlated
32 ZNF18 5 160.0 Weakly correlated
33 ZNF101 5 43.0 Weakly correlated
34 ZNF707 4 74.0 Weakly correlated
35 ZNF274 4 99.0 Highly correlated
36 ZNF558 4 99.0 Highly correlated
37 ZNF133 4 99.0 Highly correlated
38 ZNF682 4 28.9 Weakly correlated
39 ZFP69B 4 99.0 Highly correlated
40 ZNF878 4 43.0 Weakly correlated
41 ZNF92 3 28.9 Weakly correlated
42 ZNF786 3 99.0 Highly correlated
43 ZNF792 3 94.0 Moderately correlated
44 ZNF677 3 99.0 Highly correlated
45 ZNF549 3 87.0 Moderately correlated
46 ZNF8 3 99.0 Highly correlated
47 ZNF519 3 19.6 Weakly correlated
48 ZNF334 3 99.0 Highly correlated
49 ZNF471 3 94.0 Moderately correlated
50 ZNF324 3 99.0 Highly correlated
51 ZNF485 3 94.0 Moderately correlated
52 ZNF506 3 28.9 Weakly correlated
53 ZNF160 2 74.0 Weakly correlated
54 ZNF671 2 94.0 Moderately correlated
55 ZNF597 2 94.0 Moderately correlated
56 ZNF823 2 43.0 Weakly correlated
57 ZNF273 2 28.9 Weakly correlated
58 ZFP14 2 99.0 Highly correlated
59 ZNF257 2 0.0 Weakly correlated
60 ZNF282 2 319.0 Weakly correlated
61 ZNF169 1 94.0 Moderately correlated
62 ZNF735 1 28.9 Weakly correlated
63 ZNF331 1 94.0 Moderately correlated
64 ZFP82 1 99.0 Highly correlated
65 ZNF778 1 74.0 Weakly correlated
66 ZNF337 1 43.0 Weakly correlated
67 ZNF700 1 28.9 Weakly correlated
68 ZNF799 1 43.0 Weakly correlated
69 ZNF84 1 99.0 Highly correlated
70 ZNF320 1 28.9 Weakly correlated
71 ZNF287 1 99.0 Highly correlated
72 ZNF425 1 94.0 Moderately correlated
73 ZKSCAN5 1 160.0 Weakly correlated
74 ZNF440 1 28.9 Weakly correlated
75 ZNF441 1 43.0 Weakly correlated
76 ZNF681 1 28.9 Weakly correlated
77 ZNF445 1 99.0 Highly correlated
78 ZNF44 1 43.0 Weakly correlated
79 ZNF616 1 43.0 Weakly correlated
80 ZNF610 1 28.9 Weakly correlated
81 ZNF264 1 99.0 Highly correlated
82 ZNF557 1 15.2 Weakly correlated
83 ZNF547 1 74.0 Weakly correlated
84 ZNF141 1 43.0 Weakly correlated
85 ZNF528 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF17 26 69.0 Weakly correlated
2 ZNF263 11 180.0 Weakly correlated
3 ZNF28 10 28.9 Weakly correlated
4 ZNF680 7 28.9 Weakly correlated
5 ZNF534 7 19.6 Weakly correlated
6 ZNF723 7 15.2 Weakly correlated
7 ZNF766 6 43.0 Weakly correlated
8 ZNF793 5 99.0 Highly correlated
9 ZIM3 4 87.0 Moderately correlated
10 ZNF490 4 43.0 Weakly correlated
11 ZNF317 4 99.0 Highly correlated
12 ZNF75D 3 94.0 Moderately correlated
13 ZNF677 3 99.0 Highly correlated
14 ZNF479 3 6.4 Weakly correlated
15 ZFP14 2 99.0 Highly correlated
16 ZNF671 2 94.0 Moderately correlated
17 ZNF589 2 28.9 Weakly correlated
18 ZNF101 2 43.0 Weakly correlated
19 ZNF471 2 94.0 Moderately correlated
20 ZNF584 1 99.0 Highly correlated
21 ZNF707 1 74.0 Weakly correlated
22 ZNF382 1 99.0 Highly correlated
23 ZNF701 1 28.9 Weakly correlated
24 ZNF506 1 28.9 Weakly correlated
25 ZNF287 1 99.0 Highly correlated
26 ZNF18 1 160.0 Weakly correlated
27 ZNF823 1 43.0 Weakly correlated
28 ZNF175 1 94.0 Moderately correlated
29 ZNF705B 1 28.9 Weakly correlated
30 ZNF682 1 28.9 Weakly correlated
31 ZNF554 1 99.0 Highly correlated
32 ZNF282 1 319.0 Weakly correlated
33 ZNF394 1 99.0 Highly correlated
34 ZNF519 1 19.6 Weakly correlated
35 ZNF485 1 94.0 Moderately correlated
36 ZNF251 1 94.0 Moderately correlated
37 ZNF735 1 28.9 Weakly correlated
38 ZNF141 1 43.0 Weakly correlated
39 ZNF133 1 99.0 Highly correlated
40 ZKSCAN1 1 160.0 Weakly correlated
41 ZFP69B 1 99.0 Highly correlated
42 ZFP37 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF28 28.9 Weakly correlated