ZRdb KZFP & Repeats
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LTR_MLT2A2

  • Name
    MLT2A2
  • Repbase
    MLT2A2
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0001028
Description :

MLT2A2 is an ERVL LTR. However, a related LTR was "absorbed" by a mobileRicksha DNA transposon; explaining this cross-Type homology.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatggttaatactgagtgtcaacttgattggattgaaggatgcaaagtattgttcctgggtgtgtctgtgagggtgttgccaaaggagattaacatttgagtcagtggactgggagaggcagacccaccctcaatctgggtgggcaccatctaatcagctgccagcgcggccagaatanaaagcaggcagaagaacgtggaaagactagactggctnagtcttccggcctncatctttctcccgtgctggatgcttcctgccctcgaacatcggactccaagttcttcagctttgggactcggactggcttccttgctcctcagcttgcagacggcctattgtgggacctcaccttgtgatcgtgtgagtcaatactccttaataaactcccctttatatatacatctatcctattagttctgtccctctagagaaccctgactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF254 248 43.0 Weakly correlated
2 ZNF793 142 99.0 Weakly correlated
3 ZNF382 43 99.0 Weakly correlated
4 ZNF680 32 28.9 Weakly correlated
5 ZNF707 24 74.0 Highly correlated
6 ZNF394 23 99.0 Weakly correlated
7 ZNF735 21 28.9 Weakly correlated
8 ZNF679 19 28.9 Weakly correlated
9 ZNF766 16 43.0 Weakly correlated
10 ZNF317 12 99.0 Weakly correlated
11 ZFP37 10 99.0 Weakly correlated
12 ZNF519 10 19.6 Weakly correlated
13 ZIM3 10 87.0 Weakly correlated
14 ZNF257 9 0.0 Weakly correlated
15 ZNF479 8 6.4 Weakly correlated
16 ZNF140 8 99.0 Weakly correlated
17 ZNF18 7 160.0 Weakly correlated
18 ZNF723 6 15.2 Weakly correlated
19 ZNF534 6 19.6 Weakly correlated
20 ZNF92 6 28.9 Weakly correlated
21 ZNF263 6 180.0 Weakly correlated
22 ZNF490 5 43.0 Weakly correlated
23 ZNF347 5 43.0 Weakly correlated
24 ZNF324 5 99.0 Weakly correlated
25 ZNF558 5 99.0 Weakly correlated
26 ZKSCAN1 5 160.0 Weakly correlated
27 ZNF251 5 94.0 Weakly correlated
28 ZFP69B 5 99.0 Weakly correlated
29 ZNF705D 5 28.9 Weakly correlated
30 ZNF75D 4 94.0 Weakly correlated
31 ZNF878 4 43.0 Weakly correlated
32 ZNF274 4 99.0 Weakly correlated
33 ZNF429 4 28.9 Weakly correlated
34 ZNF175 4 94.0 Weakly correlated
35 ZNF197 4 99.0 Weakly correlated
36 ZNF585B 4 99.0 Weakly correlated
37 ZNF2 4 99.0 Weakly correlated
38 ZNF701 4 28.9 Weakly correlated
39 ZNF445 3 99.0 Weakly correlated
40 ZNF589 3 28.9 Weakly correlated
41 ZNF584 3 99.0 Weakly correlated
42 ZNF597 3 94.0 Weakly correlated
43 ZNF506 3 28.9 Weakly correlated
44 ZNF101 3 43.0 Weakly correlated
45 ZNF671 3 94.0 Weakly correlated
46 ZNF786 3 99.0 Weakly correlated
47 ZNF682 3 28.9 Weakly correlated
48 ZNF705B 3 28.9 Weakly correlated
49 ZNF610 2 28.9 Weakly correlated
50 ZNF792 2 94.0 Weakly correlated
51 ZNF641 2 99.0 Weakly correlated
52 ZNF681 2 28.9 Weakly correlated
53 ZNF486 2 8.6 Weakly correlated
54 ZNF211 2 94.0 Weakly correlated
55 ZNF547 2 74.0 Highly correlated
56 ZKSCAN8 2 160.0 Weakly correlated
57 ZNF28 2 28.9 Weakly correlated
58 ZNF485 2 94.0 Weakly correlated
59 ZNF334 2 99.0 Weakly correlated
60 ZNF441 2 43.0 Weakly correlated
61 ZNF160 1 74.0 Highly correlated
62 ZNF730 1 19.6 Weakly correlated
63 ZNF19 1 99.0 Weakly correlated
64 ZNF189 1 99.0 Weakly correlated
65 ZNF182 1 99.0 Weakly correlated
66 ZNF17 1 69.0 Moderately correlated
67 ZFP57 1 87.0 Weakly correlated
68 ZNF141 1 43.0 Weakly correlated
69 ZNF808 1 19.6 Weakly correlated
70 ZNF85 1 28.9 Weakly correlated
71 ZNF8 1 99.0 Weakly correlated
72 ZNF554 1 99.0 Weakly correlated
73 ZNF230 1 28.9 Weakly correlated
74 ZNF248 1 99.0 Weakly correlated
75 ZNF26 1 99.0 Weakly correlated
76 ZNF320 1 28.9 Weakly correlated
77 ZNF37A 1 99.0 Weakly correlated
78 ZNF41 1 99.0 Weakly correlated
79 ZNF677 1 99.0 Weakly correlated
80 ZNF471 1 94.0 Weakly correlated
81 ZNF627 1 74.0 Highly correlated
82 ZNF616 1 43.0 Weakly correlated
83 ZNF510 1 99.0 Weakly correlated
84 ZNF528 1 43.0 Weakly correlated
85 ZNF586 1 43.0 Weakly correlated
86 ZNF549 1 87.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF254 248 43.0 Weakly correlated
2 ZNF793 111 99.0 Weakly correlated
3 ZNF735 19 28.9 Weakly correlated
4 ZNF519 9 19.6 Weakly correlated
5 ZNF680 6 28.9 Weakly correlated
6 ZKSCAN1 3 160.0 Weakly correlated
7 ZNF479 3 6.4 Weakly correlated
8 ZNF101 2 43.0 Weakly correlated
9 ZNF506 2 28.9 Weakly correlated
10 ZNF429 2 28.9 Weakly correlated
11 ZNF679 2 28.9 Weakly correlated
12 ZNF671 2 94.0 Weakly correlated
13 ZNF705D 1 28.9 Weakly correlated
14 ZNF627 1 74.0 Highly correlated
15 ZNF677 1 99.0 Weakly correlated
16 ZNF705B 1 28.9 Weakly correlated
17 ZNF2 1 99.0 Weakly correlated
18 ZNF257 1 0.0 Weakly correlated
19 ZNF681 1 28.9 Weakly correlated
20 ZNF597 1 94.0 Weakly correlated
21 ZNF547 1 74.0 Highly correlated
22 ZNF382 1 99.0 Weakly correlated
23 ZFP37 1 99.0 Weakly correlated
24 ZNF792 1 94.0 Weakly correlated
25 ZNF251 1 94.0 Weakly correlated
26 ZNF140 1 99.0 Weakly correlated
27 ZIM3 1 87.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF254 43.0 Weakly correlated
2 ZNF680 28.9 Weakly correlated
3 ZNF735 28.9 Weakly correlated