ZRdb KZFP & Repeats
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LTR_MLT2A1

  • Name
    MLT2A1
  • Repbase
    MLT2A1
  • Type
    LTR
  • Emergence
    74.0 Mya
  • Dfam Id
    DF0001027
Description :

MLT2A1 is an ERVL LTR. However, a related LTR was "absorbed" by a mobileRicksha DNA transposon; explaining this cross-Type homology.
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtgatggttaatactgagtgtcaacttgattggattgaaggatacaaagtattgatcctgggtgtgtctgtgagggtgttgccaaaggagattaacatttgagtcagtgggctgggaaaggcagacccacccttaatctgggtgggcacnatctaatcagctgccagcgcggctagaatataagcaggcagaaaaacgtgaaaagagagactggcctagcctcccagcctacatctttctcccgtgctggatgcttcctgccctcgaacatcggactccaagttcttcagttttgggactcggactggctctccttgctcctcagcttgcagacggcctattgtgggaccttgtgatcgtgtgagttaatacttaataaactcccctttatatatatatntattccattagttctgtccctctagagaaccctgactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF254 450 43.0 Weakly correlated
2 ZNF793 116 99.0 Weakly correlated
3 ZNF707 23 74.0 Highly correlated
4 ZNF382 22 99.0 Weakly correlated
5 ZNF735 15 28.9 Weakly correlated
6 ZNF680 14 28.9 Weakly correlated
7 ZNF766 11 43.0 Weakly correlated
8 ZNF723 10 15.2 Weakly correlated
9 ZNF705B 10 28.9 Weakly correlated
10 ZNF679 10 28.9 Weakly correlated
11 ZIM3 8 87.0 Weakly correlated
12 ZNF534 8 19.6 Weakly correlated
13 ZNF317 8 99.0 Weakly correlated
14 ZNF506 7 28.9 Weakly correlated
15 ZNF519 7 19.6 Weakly correlated
16 ZNF589 6 28.9 Weakly correlated
17 ZNF175 6 94.0 Weakly correlated
18 ZNF486 5 8.6 Weakly correlated
19 ZNF705D 5 28.9 Weakly correlated
20 ZFP37 5 99.0 Weakly correlated
21 ZKSCAN8 5 160.0 Weakly correlated
22 ZNF263 4 180.0 Weakly correlated
23 ZNF257 4 0.0 Weakly correlated
24 ZNF584 4 99.0 Weakly correlated
25 ZNF251 4 94.0 Weakly correlated
26 ZNF554 3 99.0 Weakly correlated
27 ZNF485 3 94.0 Weakly correlated
28 ZNF479 3 6.4 Weakly correlated
29 ZNF490 3 43.0 Weakly correlated
30 ZNF394 3 99.0 Weakly correlated
31 ZNF28 3 28.9 Weakly correlated
32 ZNF551 2 94.0 Weakly correlated
33 ZNF585B 2 99.0 Weakly correlated
34 ZNF75D 2 94.0 Weakly correlated
35 ZNF141 2 43.0 Weakly correlated
36 ZNF234 2 99.0 Weakly correlated
37 ZNF471 2 94.0 Weakly correlated
38 ZNF197 2 99.0 Weakly correlated
39 ZNF101 1 43.0 Weakly correlated
40 ZNF304 1 99.0 Weakly correlated
41 ZNF157 1 99.0 Weakly correlated
42 ZNF700 1 28.9 Weakly correlated
43 ZNF282 1 319.0 Weakly correlated
44 ZNF274 1 99.0 Weakly correlated
45 ZNF133 1 99.0 Weakly correlated
46 ZNF671 1 94.0 Weakly correlated
47 ZNF26 1 99.0 Weakly correlated
48 ZNF211 1 94.0 Weakly correlated
49 ZKSCAN1 1 160.0 Weakly correlated
50 ZNF778 1 74.0 Highly correlated
51 ZNF77 1 87.0 Weakly correlated
52 ZNF780A 1 43.0 Weakly correlated
53 ZNF227 1 99.0 Weakly correlated
54 ZNF675 1 8.6 Weakly correlated
55 ZNF649 1 28.9 Weakly correlated
56 ZNF597 1 94.0 Weakly correlated
57 ZNF586 1 43.0 Weakly correlated
58 ZNF33A 1 99.0 Weakly correlated
59 ZNF347 1 43.0 Weakly correlated
60 ZNF564 1 74.0 Highly correlated
61 ZNF558 1 99.0 Weakly correlated
62 ZNF18 1 160.0 Weakly correlated
63 ZNF425 1 94.0 Weakly correlated
64 ZNF177 1 94.0 Weakly correlated
65 ZNF528 1 43.0 Weakly correlated
66 ZNF429 1 28.9 Weakly correlated
67 ZNF468 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF254 433 43.0 Weakly correlated
2 ZNF793 97 99.0 Weakly correlated
3 ZNF735 13 28.9 Weakly correlated
4 ZNF534 8 19.6 Weakly correlated
5 ZNF506 5 28.9 Weakly correlated
6 ZNF519 3 19.6 Weakly correlated
7 ZNF680 3 28.9 Weakly correlated
8 ZKSCAN1 1 160.0 Weakly correlated
9 ZNF133 1 99.0 Weakly correlated
10 ZNF141 1 43.0 Weakly correlated
11 ZNF705B 1 28.9 Weakly correlated
12 ZNF75D 1 94.0 Weakly correlated
13 ZNF211 1 94.0 Weakly correlated
14 ZNF671 1 94.0 Weakly correlated
15 ZNF723 1 15.2 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF254 43.0 Weakly correlated
2 ZNF534 19.6 Weakly correlated
3 ZNF735 28.9 Weakly correlated