ZRdb KZFP & Repeats
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LTR_MLT1O

  • Name
    MLT1O
  • Repbase
    No find
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001026
Description :

MLT10 has 5 bp TSDs. There are ~1000 about copies in the reconstructedLaurasiatherian genome (with substitution levels of ~35%). Note that afull-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element isderived from an ERV (Endogenous Retrovirus), but only contains the Gaggene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagtggacaccttttggggtgtctgcccagccccccttctctgggaaccgcccccccacccacaggggtgggcccccggcagccatgtttgtactacgtgaccccgcccccctggccacagctgattggaccaggggtggacacctgacccaagctgggccaatcagattctctctcccgggaatttggaattgggactnagagatnctagtcagtctctgctggtcgcttgaactgggganatgtaaactcgggagctgtggggcggccatnttccgccatgtgnacggagaagcagagaaagccggtctgcagagagaggagaatgaagcagacgcgcagagagaagcagagacgagagaccgggtggcctcagagacagagaaagatggagccgattctctcctgaggcccggctgcattcctgcccttgggttccgtgagacacccctgtatccttataataaattccccttttttgcttaagctagctcgagtgggtttctgttacttgcaaccaaaagagccttgactaagaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 218 87.0 Moderately correlated
2 ZNF382 163 99.0 Highly correlated
3 ZNF766 98 43.0 Weakly correlated
4 ZNF263 64 180.0 Weakly correlated
5 ZNF534 57 19.6 Weakly correlated
6 ZNF589 52 28.9 Weakly correlated
7 ZNF175 50 94.0 Moderately correlated
8 ZNF394 50 99.0 Highly correlated
9 ZNF705B 48 28.9 Weakly correlated
10 ZNF584 33 99.0 Highly correlated
11 ZNF197 31 99.0 Highly correlated
12 ZNF679 31 28.9 Weakly correlated
13 ZNF705D 31 28.9 Weakly correlated
14 ZKSCAN1 30 160.0 Weakly correlated
15 ZNF317 29 99.0 Highly correlated
16 ZKSCAN8 27 160.0 Weakly correlated
17 ZNF554 27 99.0 Highly correlated
18 ZNF793 25 99.0 Highly correlated
19 ZNF680 23 28.9 Weakly correlated
20 ZNF2 22 99.0 Highly correlated
21 ZFP37 21 99.0 Highly correlated
22 ZNF101 18 43.0 Weakly correlated
23 ZNF257 18 0.0 Weakly correlated
24 ZNF528 18 43.0 Weakly correlated
25 ZFP69B 17 99.0 Highly correlated
26 ZNF479 16 6.4 Weakly correlated
27 ZNF324 15 99.0 Highly correlated
28 ZNF18 13 160.0 Weakly correlated
29 ZNF597 13 94.0 Moderately correlated
30 ZNF610 12 28.9 Weakly correlated
31 ZNF169 11 94.0 Moderately correlated
32 ZNF320 11 28.9 Weakly correlated
33 ZNF485 10 94.0 Moderately correlated
34 ZNF558 9 99.0 Highly correlated
35 ZNF92 9 28.9 Weakly correlated
36 ZNF350 8 99.0 Highly correlated
37 ZNF701 7 28.9 Weakly correlated
38 ZNF506 6 28.9 Weakly correlated
39 ZNF723 6 15.2 Weakly correlated
40 ZNF75D 6 94.0 Moderately correlated
41 ZNF141 5 43.0 Weakly correlated
42 ZNF251 5 94.0 Moderately correlated
43 ZNF274 5 99.0 Highly correlated
44 ZNF331 5 94.0 Moderately correlated
45 ZNF420 5 94.0 Moderately correlated
46 ZNF425 5 94.0 Moderately correlated
47 ZNF490 5 43.0 Weakly correlated
48 ZNF671 5 94.0 Moderately correlated
49 ZNF735 5 28.9 Weakly correlated
50 ZNF786 5 99.0 Highly correlated
51 ZKSCAN5 4 160.0 Weakly correlated
52 ZNF202 4 160.0 Weakly correlated
53 ZNF264 4 99.0 Highly correlated
54 ZNF429 4 28.9 Weakly correlated
55 ZNF549 4 87.0 Moderately correlated
56 ZNF707 4 74.0 Weakly correlated
57 ZNF823 4 43.0 Weakly correlated
58 ZNF133 3 99.0 Highly correlated
59 ZNF182 3 99.0 Highly correlated
60 ZNF28 3 28.9 Weakly correlated
61 ZNF780A 3 43.0 Weakly correlated
62 ZNF792 3 94.0 Moderately correlated
63 ZFP28 2 99.0 Highly correlated
64 ZFP57 2 87.0 Moderately correlated
65 ZNF136 2 74.0 Weakly correlated
66 ZNF140 2 99.0 Highly correlated
67 ZNF189 2 99.0 Highly correlated
68 ZNF468 2 28.9 Weakly correlated
69 ZNF471 2 94.0 Moderately correlated
70 ZNF483 2 99.0 Highly correlated
71 ZNF486 2 8.6 Weakly correlated
72 ZNF519 2 19.6 Weakly correlated
73 ZNF573 2 94.0 Moderately correlated
74 ZNF641 2 99.0 Highly correlated
75 ZNF667 2 99.0 Highly correlated
76 ZNF684 2 99.0 Highly correlated
77 ZNF730 2 19.6 Weakly correlated
78 ZNF816 2 28.9 Weakly correlated
79 ZNF845 2 28.9 Weakly correlated
80 ZNF84 2 99.0 Highly correlated
81 ZFP30 1 99.0 Highly correlated
82 ZFP69 1 99.0 Highly correlated
83 ZIK1 1 87.0 Moderately correlated
84 ZNF135 1 94.0 Moderately correlated
85 ZNF157 1 99.0 Highly correlated
86 ZNF17 1 69.0 Weakly correlated
87 ZNF248 1 99.0 Highly correlated
88 ZNF267 1 43.0 Weakly correlated
89 ZNF26 1 99.0 Highly correlated
90 ZNF273 1 28.9 Weakly correlated
91 ZNF347 1 43.0 Weakly correlated
92 ZNF354A 1 99.0 Highly correlated
93 ZNF44 1 43.0 Weakly correlated
94 ZNF547 1 74.0 Weakly correlated
95 ZNF559 1 74.0 Weakly correlated
96 ZNF571 1 99.0 Highly correlated
97 ZNF585A 1 99.0 Highly correlated
98 ZNF585B 1 99.0 Highly correlated
99 ZNF596 1 94.0 Moderately correlated
100 ZNF669 1 43.0 Weakly correlated
101 ZNF674 1 99.0 Highly correlated
102 ZNF682 1 28.9 Weakly correlated
103 ZNF749 1 28.9 Weakly correlated
104 ZNF75A 1 94.0 Moderately correlated
105 ZNF778 1 74.0 Weakly correlated
106 ZNF780B 1 74.0 Weakly correlated
107 ZNF8 1 99.0 Highly correlated
108 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 114 87.0 Moderately correlated
2 ZNF534 35 19.6 Weakly correlated
3 ZNF263 11 180.0 Weakly correlated
4 ZNF554 8 99.0 Highly correlated
5 ZNF257 7 0.0 Weakly correlated
6 ZNF485 6 94.0 Moderately correlated
7 ZNF169 5 94.0 Moderately correlated
8 ZNF479 5 6.4 Weakly correlated
9 ZNF793 5 99.0 Highly correlated
10 ZNF382 5 99.0 Highly correlated
11 ZNF528 5 43.0 Weakly correlated
12 ZNF506 4 28.9 Weakly correlated
13 ZNF705D 4 28.9 Weakly correlated
14 ZNF671 4 94.0 Moderately correlated
15 ZNF680 3 28.9 Weakly correlated
16 ZNF723 3 15.2 Weakly correlated
17 ZNF350 3 99.0 Highly correlated
18 ZNF597 3 94.0 Moderately correlated
19 ZNF197 3 99.0 Highly correlated
20 ZNF549 3 87.0 Moderately correlated
21 ZNF679 3 28.9 Weakly correlated
22 ZNF320 3 28.9 Weakly correlated
23 ZNF317 3 99.0 Highly correlated
24 ZNF584 2 99.0 Highly correlated
25 ZNF780A 2 43.0 Weakly correlated
26 ZNF766 2 43.0 Weakly correlated
27 ZNF468 2 28.9 Weakly correlated
28 ZFP37 2 99.0 Highly correlated
29 ZNF701 2 28.9 Weakly correlated
30 ZNF589 2 28.9 Weakly correlated
31 ZNF92 2 28.9 Weakly correlated
32 ZKSCAN1 2 160.0 Weakly correlated
33 ZNF823 2 43.0 Weakly correlated
34 ZNF75D 2 94.0 Moderately correlated
35 ZNF705B 2 28.9 Weakly correlated
36 ZNF735 2 28.9 Weakly correlated
37 ZNF429 2 28.9 Weakly correlated
38 ZNF133 1 99.0 Highly correlated
39 ZNF136 1 74.0 Weakly correlated
40 ZNF141 1 43.0 Weakly correlated
41 ZNF101 1 43.0 Weakly correlated
42 ZNF707 1 74.0 Weakly correlated
43 ZNF331 1 94.0 Moderately correlated
44 ZFP28 1 99.0 Highly correlated
45 ZKSCAN5 1 160.0 Weakly correlated
46 ZNF816 1 28.9 Weakly correlated
47 ZNF274 1 99.0 Highly correlated
48 ZNF2 1 99.0 Highly correlated
49 ZNF585B 1 99.0 Highly correlated
50 ZNF573 1 94.0 Moderately correlated
51 ZNF44 1 43.0 Weakly correlated
52 ZNF354A 1 99.0 Highly correlated
53 ZNF610 1 28.9 Weakly correlated
54 ZNF189 1 99.0 Highly correlated
55 ZNF682 1 28.9 Weakly correlated
56 ZNF684 1 99.0 Highly correlated
57 ZNF792 1 94.0 Moderately correlated
58 ZNF28 1 28.9 Weakly correlated
59 ZNF248 1 99.0 Highly correlated
60 ZNF667 1 99.0 Highly correlated
61 ZNF585A 1 99.0 Highly correlated
62 ZNF347 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF257 0.0 Weakly correlated
3 ZNF534 19.6 Weakly correlated