ZRdb KZFP & Repeats
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LTR_MLT1N2

  • Name
    MLT1N2
  • Repbase
    MLT1N2
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001025
Description :

MLT1N2 is unusual, as it contains features of both MLT1 elements andretroviral LTRs. Individual LTRs are ~72% similar to a consensus; whichmakes them likely links between MLT1 retroelements and "true"retroviruses. It has been renamed from the original, LTR67. Note that afull-length ERV-MaLR (Mammalian apparent LTR retrotransposon) element isderived from an ERV (Endogenous Retrovirus), but only contains the Gaggene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagtggacatttgtcattctttttggccgcccagcatctgaacncccttcctatgtttggggaattccccaccttatgagtcccgcctccccaaggtagaagccagaaactcgctttcccagcctcccttgcagctagggcgcgggcacgtgacctaggctccgccaatcagacgcacccgcnccagactttgaatcggaagctagtgacgcaaggaagcagggaccgcgcggaatccattctctggcgagggtggcggcagctggcatccagtttccagaggcagcagtggcagnggttctagcggcggcgtccagcgctcatgtgtggtgcaagctgcggtgtctgtgcccagcggcggcagcagtggtgtcctcaccggaccagttctgcggcgtgattttgggcattgttcctggctgcgtagcctccaagcctggttctccggccctcccggagattctgtgagctacccaatatcctttcaataaattccttttctgcttaaattagccagagtcggtttctgttgcttgcaactaagaaccctgactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 318 87.0 Moderately correlated
2 ZNF382 253 99.0 Highly correlated
3 ZNF263 99 180.0 Weakly correlated
4 ZNF766 93 43.0 Weakly correlated
5 ZNF394 69 99.0 Highly correlated
6 ZNF92 64 28.9 Weakly correlated
7 ZNF2 50 99.0 Highly correlated
8 ZFP37 48 99.0 Highly correlated
9 ZNF175 48 94.0 Moderately correlated
10 ZNF589 45 28.9 Weakly correlated
11 ZKSCAN1 44 160.0 Weakly correlated
12 ZNF18 38 160.0 Weakly correlated
13 ZNF554 37 99.0 Highly correlated
14 ZNF75D 33 94.0 Moderately correlated
15 ZNF534 30 19.6 Weakly correlated
16 ZNF317 28 99.0 Highly correlated
17 ZNF597 28 94.0 Moderately correlated
18 ZNF197 27 99.0 Highly correlated
19 ZNF701 27 28.9 Weakly correlated
20 ZNF566 24 99.0 Highly correlated
21 ZNF584 24 99.0 Highly correlated
22 ZNF479 22 6.4 Weakly correlated
23 ZNF490 22 43.0 Weakly correlated
24 ZNF101 21 43.0 Weakly correlated
25 ZKSCAN8 20 160.0 Weakly correlated
26 ZNF324 20 99.0 Highly correlated
27 ZFP69B 19 99.0 Highly correlated
28 ZNF320 19 28.9 Weakly correlated
29 ZNF257 16 0.0 Weakly correlated
30 ZNF274 16 99.0 Highly correlated
31 ZNF610 16 28.9 Weakly correlated
32 ZNF680 16 28.9 Weakly correlated
33 ZNF705B 16 28.9 Weakly correlated
34 ZNF519 15 19.6 Weakly correlated
35 ZNF679 14 28.9 Weakly correlated
36 ZNF705D 14 28.9 Weakly correlated
37 ZNF793 14 99.0 Highly correlated
38 ZNF558 13 99.0 Highly correlated
39 ZNF723 13 15.2 Weakly correlated
40 ZFP57 12 87.0 Moderately correlated
41 ZNF28 11 28.9 Weakly correlated
42 ZNF485 10 94.0 Moderately correlated
43 ZNF528 9 43.0 Weakly correlated
44 ZNF93 9 8.6 Weakly correlated
45 ZNF251 8 94.0 Moderately correlated
46 ZNF486 8 8.6 Weakly correlated
47 ZNF506 8 28.9 Weakly correlated
48 ZNF547 8 74.0 Weakly correlated
49 ZNF549 8 87.0 Moderately correlated
50 ZNF169 7 94.0 Moderately correlated
51 ZNF331 7 94.0 Moderately correlated
52 ZNF429 7 28.9 Weakly correlated
53 ZNF585B 7 99.0 Highly correlated
54 ZNF140 6 99.0 Highly correlated
55 ZNF41 6 99.0 Highly correlated
56 ZNF563 6 28.9 Weakly correlated
57 ZNF695 6 28.9 Weakly correlated
58 ZNF707 6 74.0 Weakly correlated
59 ZNF778 6 74.0 Weakly correlated
60 ZNF792 6 94.0 Moderately correlated
61 ZNF133 5 99.0 Highly correlated
62 ZNF425 5 94.0 Moderately correlated
63 ZNF527 5 99.0 Highly correlated
64 ZNF786 5 99.0 Highly correlated
65 ZNF789 5 99.0 Highly correlated
66 ZNF182 4 99.0 Highly correlated
67 ZNF585A 4 99.0 Highly correlated
68 ZNF735 4 28.9 Weakly correlated
69 ZNF8 4 99.0 Highly correlated
70 ZFP69 3 99.0 Highly correlated
71 ZNF350 3 99.0 Highly correlated
72 ZNF461 3 99.0 Highly correlated
73 ZNF471 3 94.0 Moderately correlated
74 ZNF573 3 94.0 Moderately correlated
75 ZNF675 3 8.6 Weakly correlated
76 ZNF682 3 28.9 Weakly correlated
77 ZNF684 3 99.0 Highly correlated
78 ZNF780A 3 43.0 Weakly correlated
79 ZNF823 3 43.0 Weakly correlated
80 ZFP28 2 99.0 Highly correlated
81 ZNF141 2 43.0 Weakly correlated
82 ZNF33A 2 99.0 Highly correlated
83 ZNF44 2 43.0 Weakly correlated
84 ZNF480 2 43.0 Weakly correlated
85 ZNF582 2 99.0 Highly correlated
86 ZNF605 2 99.0 Highly correlated
87 ZNF777 2 319.0 Weakly correlated
88 ZNF808 2 19.6 Weakly correlated
89 ZKSCAN5 1 160.0 Weakly correlated
90 ZNF10 1 99.0 Highly correlated
91 ZNF114 1 28.9 Weakly correlated
92 ZNF124 1 43.0 Weakly correlated
93 ZNF136 1 74.0 Weakly correlated
94 ZNF157 1 99.0 Highly correlated
95 ZNF17 1 69.0 Weakly correlated
96 ZNF211 1 94.0 Moderately correlated
97 ZNF26 1 99.0 Highly correlated
98 ZNF273 1 28.9 Weakly correlated
99 ZNF284 1 43.0 Weakly correlated
100 ZNF33B 1 99.0 Highly correlated
101 ZNF347 1 43.0 Weakly correlated
102 ZNF383 1 99.0 Highly correlated
103 ZNF417 1 28.9 Weakly correlated
104 ZNF420 1 94.0 Moderately correlated
105 ZNF436 1 180.0 Weakly correlated
106 ZNF440 1 28.9 Weakly correlated
107 ZNF441 1 43.0 Weakly correlated
108 ZNF442 1 43.0 Weakly correlated
109 ZNF454 1 99.0 Highly correlated
110 ZNF483 1 99.0 Highly correlated
111 ZNF510 1 99.0 Highly correlated
112 ZNF544 1 0.0 Weakly correlated
113 ZNF559 1 74.0 Weakly correlated
114 ZNF568 1 99.0 Highly correlated
115 ZNF586 1 43.0 Weakly correlated
116 ZNF611 1 19.6 Weakly correlated
117 ZNF641 1 99.0 Highly correlated
118 ZNF671 1 94.0 Moderately correlated
119 ZNF716 1 19.6 Weakly correlated
120 ZNF730 1 19.6 Weakly correlated
121 ZNF799 1 43.0 Weakly correlated
122 ZNF816 1 28.9 Weakly correlated
123 ZNF878 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 189 87.0 Moderately correlated
2 ZNF566 23 99.0 Highly correlated
3 ZNF263 14 180.0 Weakly correlated
4 ZNF75D 14 94.0 Moderately correlated
5 ZNF597 12 94.0 Moderately correlated
6 ZNF382 12 99.0 Highly correlated
7 ZNF554 9 99.0 Highly correlated
8 ZNF534 9 19.6 Weakly correlated
9 ZNF766 8 43.0 Weakly correlated
10 ZNF479 7 6.4 Weakly correlated
11 ZNF18 7 160.0 Weakly correlated
12 ZNF485 6 94.0 Moderately correlated
13 ZNF793 6 99.0 Highly correlated
14 ZNF490 6 43.0 Weakly correlated
15 ZNF680 5 28.9 Weakly correlated
16 ZNF2 5 99.0 Highly correlated
17 ZNF28 5 28.9 Weakly correlated
18 ZNF257 5 0.0 Weakly correlated
19 ZNF789 5 99.0 Highly correlated
20 ZNF506 4 28.9 Weakly correlated
21 ZNF92 4 28.9 Weakly correlated
22 ZNF589 4 28.9 Weakly correlated
23 ZFP37 4 99.0 Highly correlated
24 ZNF320 3 28.9 Weakly correlated
25 ZNF197 3 99.0 Highly correlated
26 ZNF584 3 99.0 Highly correlated
27 ZNF701 3 28.9 Weakly correlated
28 ZNF723 3 15.2 Weakly correlated
29 ZFP57 3 87.0 Moderately correlated
30 ZNF175 3 94.0 Moderately correlated
31 ZNF429 3 28.9 Weakly correlated
32 ZNF324 3 99.0 Highly correlated
33 ZNF471 2 94.0 Moderately correlated
34 ZNF317 2 99.0 Highly correlated
35 ZNF684 2 99.0 Highly correlated
36 ZNF549 2 87.0 Moderately correlated
37 ZNF133 2 99.0 Highly correlated
38 ZNF101 2 43.0 Weakly correlated
39 ZNF141 1 43.0 Weakly correlated
40 ZNF274 1 99.0 Highly correlated
41 ZNF140 1 99.0 Highly correlated
42 ZNF331 1 94.0 Moderately correlated
43 ZNF417 1 28.9 Weakly correlated
44 ZNF695 1 28.9 Weakly correlated
45 ZNF480 1 43.0 Weakly correlated
46 ZNF136 1 74.0 Weakly correlated
47 ZNF641 1 99.0 Highly correlated
48 ZNF610 1 28.9 Weakly correlated
49 ZNF41 1 99.0 Highly correlated
50 ZNF679 1 28.9 Weakly correlated
51 ZKSCAN1 1 160.0 Weakly correlated
52 ZNF519 1 19.6 Weakly correlated
53 ZNF486 1 8.6 Weakly correlated
54 ZNF671 1 94.0 Moderately correlated
55 ZNF33A 1 99.0 Highly correlated
56 ZNF394 1 99.0 Highly correlated
57 ZNF483 1 99.0 Highly correlated
58 ZNF527 1 99.0 Highly correlated
59 ZNF675 1 8.6 Weakly correlated
60 ZNF585A 1 99.0 Highly correlated
61 ZNF350 1 99.0 Highly correlated
62 ZNF8 1 99.0 Highly correlated
63 ZFP69 1 99.0 Highly correlated
64 ZNF44 1 43.0 Weakly correlated
65 ZNF510 1 99.0 Highly correlated
66 ZNF573 1 94.0 Moderately correlated
67 ZNF792 1 94.0 Moderately correlated
68 ZKSCAN8 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZIM3 87.0 Moderately correlated
2 ZNF566 99.0 Highly correlated
3 ZNF597 94.0 Moderately correlated
4 ZNF75D 94.0 Moderately correlated