ZRdb KZFP & Repeats
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LTR_MLT1L

  • Name
    MLT1L
  • Repbase
    MLT1L
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001023
Description :

MLT1L has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalianapparent LTR retrotransposon) element is derived from an ERV (EndogenousRetrovirus), but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcagacactgttggttgcctacccaacagccattctccccttcttccttgctaacagaaccccgattttgttcaggtatcnggcggccatgtgcttcaggggaggctggncccctccccagccccagggggtgaatcntgattggtctaagccaatcatggtaatcccattccccttgccagtgattggtttaggaatgggcatgtgacncaattctggccaatgagacgtgaggggaagtctgctggggggcttctgggaaagntttcctcgctcttaaaaaaaggacataaggaagagatgtcctcttttcttgcctctggacgttgtcgtgtgnggatgtgatgcctggagctgcngcagccatcttgcgaccatgaggggacaagcctgagaggaaaagccaacacgctgaggatggcagagcggaaagatggaaagaacctgggtccttgatgacatcgttgagccgctgaattaaccaaccctggaaccgccctacctccggacttcttgttatgtgagataataaattttccttattgtttaagccantttgagttgggttttctgttacttgcagccgaaagcatcctaactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF707 4 74.0 Weakly correlated
2 ZIM3 3 87.0 Moderately correlated
3 ZFP69B 2 99.0 Highly correlated
4 ZNF2 2 99.0 Highly correlated
5 ZNF641 2 99.0 Highly correlated
6 ZNF610 2 28.9 Weakly correlated
7 ZNF766 1 43.0 Weakly correlated
8 ZNF723 1 15.2 Weakly correlated
9 ZNF684 1 99.0 Highly correlated
10 ZNF679 1 28.9 Weakly correlated
11 ZNF558 1 99.0 Highly correlated
12 ZNF485 1 94.0 Moderately correlated
13 ZNF479 1 6.4 Weakly correlated
14 ZNF429 1 28.9 Weakly correlated
15 ZNF418 1 43.0 Weakly correlated
16 ZNF382 1 99.0 Highly correlated
17 ZNF287 1 99.0 Highly correlated
18 ZNF264 1 99.0 Highly correlated
19 ZNF263 1 180.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 1 87.0 Moderately correlated
2 ZNF429 1 28.9 Weakly correlated
3 ZNF479 1 6.4 Weakly correlated
4 ZNF485 1 94.0 Moderately correlated
5 ZNF264 1 99.0 Highly correlated
6 ZNF684 1 99.0 Highly correlated
7 ZNF707 1 74.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats