ZRdb KZFP & Repeats
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LTR_MLT1K

  • Name
    MLT1K
  • Repbase
    MLT1K
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001022
Description :

MLT1K has 5 bp TSDs. Reconstruction expanded upon, and replaces MER98.Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtagtggacatctgttgtttttgcctgcccagcatccattcccccttcttctggtaacagcaccccgattttcctttggggaaccacccctcccccactctcagtccatgtggttcgggtggggctgaccccacccctcggctccaggggtgggcacgtgacccaggcctggccaatcagagcattccatccccctggccacagtgattggttcagggatgggcacgtgacccaagccgggccaatgagagtcagccctgggacttttgctggaactattgggaaagagangctctctttccgctggggttgctaagctggnaggatgtaagcctggagctgctggcggccatcttgccaccacgtggggagagcctgcctgagaatgaagccaacacagaggaaagcagagccgagagatggagagagacagantcctgatgacatcgtttgagcncctggatccagccgtgcctgaagccaganctacccctggacttttcagttacgtgagccaataaattcccttttttgcttaagccagtttgagttgggtttctgtcacttgcaaccgaaagagtcctgactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 11 99.0 Highly correlated
2 ZNF680 7 28.9 Weakly correlated
3 ZNF766 5 43.0 Weakly correlated
4 ZNF707 5 74.0 Weakly correlated
5 ZNF197 4 99.0 Highly correlated
6 ZNF263 4 180.0 Weakly correlated
7 ZNF793 3 99.0 Highly correlated
8 ZNF589 3 28.9 Weakly correlated
9 ZNF584 3 99.0 Highly correlated
10 ZNF534 3 19.6 Weakly correlated
11 ZKSCAN1 2 160.0 Weakly correlated
12 ZNF554 2 99.0 Highly correlated
13 ZNF485 2 94.0 Moderately correlated
14 ZNF317 2 99.0 Highly correlated
15 ZNF331 2 94.0 Moderately correlated
16 ZKSCAN8 2 160.0 Weakly correlated
17 ZNF175 2 94.0 Moderately correlated
18 ZNF28 2 28.9 Weakly correlated
19 ZFP37 1 99.0 Highly correlated
20 ZNF723 1 15.2 Weakly correlated
21 ZNF101 1 43.0 Weakly correlated
22 ZNF682 1 28.9 Weakly correlated
23 ZNF674 1 99.0 Highly correlated
24 ZNF18 1 160.0 Weakly correlated
25 ZNF257 1 0.0 Weakly correlated
26 ZNF578 1 15.2 Weakly correlated
27 ZNF264 1 99.0 Highly correlated
28 ZNF528 1 43.0 Weakly correlated
29 ZNF519 1 19.6 Weakly correlated
30 ZNF506 1 28.9 Weakly correlated
31 ZNF2 1 99.0 Highly correlated
32 ZNF479 1 6.4 Weakly correlated
33 ZNF471 1 94.0 Moderately correlated
34 ZNF394 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 3 28.9 Weakly correlated
2 ZNF485 2 94.0 Moderately correlated
3 ZNF707 2 74.0 Weakly correlated
4 ZNF506 1 28.9 Weakly correlated
5 ZNF263 1 180.0 Weakly correlated
6 ZNF793 1 99.0 Highly correlated
7 ZNF674 1 99.0 Highly correlated
8 ZNF257 1 0.0 Weakly correlated
9 ZNF534 1 19.6 Weakly correlated
10 ZNF723 1 15.2 Weakly correlated
11 ZNF479 1 6.4 Weakly correlated
12 ZNF2 1 99.0 Highly correlated
13 ZNF528 1 43.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats