ZRdb KZFP & Repeats
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LTR_MLT1J2

  • Name
    MLT1J2
  • Repbase
    MLT1J2
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001020
Description :

MLT1J2 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalianapparent LTR retrotransposon) element is derived from an ERV (EndogenousRetrovirus), but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcagagactggctagntgttcaccaaancccgtttccttttcctcctgggcacacagctagactacatttcccagcctcccttgcagttaggtgnggccatgtgactgagttctggccaatggaatgtgggcggaagtgatgtgcgccacttccaggcctggcccataaaaacctcccacgcgatcctccacgctctctctctttccccatctgccggctggatgcagaggatccagtggaggactccgaggccctaggggatggcggagccacaagatggaaggagcctgggtccctgaatgaccgcgtggagcagagccgcccaccccccagaaccacccgcattggactgtgacgtgagcgagaaataaacttttattgtgttaagccactgagatttgggggttgtttgttacagcagttagcctaccctgactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 333 99.0 Highly correlated
2 ZNF766 194 43.0 Weakly correlated
3 ZNF263 136 180.0 Weakly correlated
4 ZNF333 130 99.0 Highly correlated
5 ZNF479 96 6.4 Weakly correlated
6 ZNF383 79 99.0 Highly correlated
7 ZNF589 73 28.9 Weakly correlated
8 ZNF394 67 99.0 Highly correlated
9 ZNF175 65 94.0 Moderately correlated
10 ZFP37 63 99.0 Highly correlated
11 ZNF197 63 99.0 Highly correlated
12 ZNF680 59 28.9 Weakly correlated
13 ZNF317 57 99.0 Highly correlated
14 ZKSCAN1 56 160.0 Weakly correlated
15 ZNF584 54 99.0 Highly correlated
16 ZNF534 52 19.6 Weakly correlated
17 ZNF554 51 99.0 Highly correlated
18 ZKSCAN8 45 160.0 Weakly correlated
19 ZIM3 41 87.0 Moderately correlated
20 ZNF723 38 15.2 Weakly correlated
21 ZNF793 36 99.0 Highly correlated
22 ZNF12 35 99.0 Highly correlated
23 ZNF679 34 28.9 Weakly correlated
24 ZNF18 33 160.0 Weakly correlated
25 ZNF92 30 28.9 Weakly correlated
26 ZFP69B 29 99.0 Highly correlated
27 ZNF2 27 99.0 Highly correlated
28 ZNF705B 26 28.9 Weakly correlated
29 ZNF101 25 43.0 Weakly correlated
30 ZNF324 24 99.0 Highly correlated
31 ZNF558 24 99.0 Highly correlated
32 ZNF701 22 28.9 Weakly correlated
33 ZNF707 22 74.0 Weakly correlated
34 ZNF528 21 43.0 Weakly correlated
35 ZNF705D 21 28.9 Weakly correlated
36 ZNF549 20 87.0 Moderately correlated
37 ZNF257 19 0.0 Weakly correlated
38 ZNF320 19 28.9 Weakly correlated
39 ZNF597 16 94.0 Moderately correlated
40 ZNF350 13 99.0 Highly correlated
41 ZFP57 11 87.0 Moderately correlated
42 ZNF485 11 94.0 Moderately correlated
43 ZNF490 11 43.0 Weakly correlated
44 ZNF506 11 28.9 Weakly correlated
45 ZNF75D 11 94.0 Moderately correlated
46 ZNF251 10 94.0 Moderately correlated
47 ZNF519 10 19.6 Weakly correlated
48 ZNF610 10 28.9 Weakly correlated
49 ZNF274 9 99.0 Highly correlated
50 ZNF133 8 99.0 Highly correlated
51 ZNF547 8 74.0 Weakly correlated
52 ZNF566 8 99.0 Highly correlated
53 ZNF735 8 28.9 Weakly correlated
54 ZKSCAN5 7 160.0 Weakly correlated
55 ZNF8 7 99.0 Highly correlated
56 ZNF140 6 99.0 Highly correlated
57 ZNF28 5 28.9 Weakly correlated
58 ZNF429 5 28.9 Weakly correlated
59 ZNF736 5 43.0 Weakly correlated
60 RBAK 4 99.0 Highly correlated
61 ZFP28 4 99.0 Highly correlated
62 ZNF273 4 28.9 Weakly correlated
63 ZNF486 4 8.6 Weakly correlated
64 ZNF585A 4 99.0 Highly correlated
65 ZNF674 4 99.0 Highly correlated
66 ZNF682 4 28.9 Weakly correlated
67 ZNF778 4 74.0 Weakly correlated
68 ZNF93 4 8.6 Weakly correlated
69 ZNF136 3 74.0 Weakly correlated
70 ZNF189 3 99.0 Highly correlated
71 ZNF264 3 99.0 Highly correlated
72 ZNF30 3 94.0 Moderately correlated
73 ZNF33A 3 99.0 Highly correlated
74 ZNF425 3 94.0 Moderately correlated
75 ZNF75A 3 94.0 Moderately correlated
76 ZNF792 3 94.0 Moderately correlated
77 ZNF823 3 43.0 Weakly correlated
78 ZFP69 2 99.0 Highly correlated
79 ZNF141 2 43.0 Weakly correlated
80 ZNF169 2 94.0 Moderately correlated
81 ZNF17 2 69.0 Weakly correlated
82 ZNF202 2 160.0 Weakly correlated
83 ZNF222 2 43.0 Weakly correlated
84 ZNF282 2 319.0 Weakly correlated
85 ZNF284 2 43.0 Weakly correlated
86 ZNF337 2 43.0 Weakly correlated
87 ZNF347 2 43.0 Weakly correlated
88 ZNF34 2 99.0 Highly correlated
89 ZNF418 2 43.0 Weakly correlated
90 ZNF41 2 99.0 Highly correlated
91 ZNF436 2 180.0 Weakly correlated
92 ZNF440 2 28.9 Weakly correlated
93 ZNF441 2 43.0 Weakly correlated
94 ZNF468 2 28.9 Weakly correlated
95 ZNF471 2 94.0 Moderately correlated
96 ZNF557 2 15.2 Weakly correlated
97 ZNF563 2 28.9 Weakly correlated
98 ZNF585B 2 99.0 Highly correlated
99 ZNF605 2 99.0 Highly correlated
100 ZNF671 2 94.0 Moderately correlated
101 ZNF695 2 28.9 Weakly correlated
102 ZNF789 2 99.0 Highly correlated
103 ZNF816 2 28.9 Weakly correlated
104 PRDM9 1 0.0 Weakly correlated
105 ZFP14 1 99.0 Highly correlated
106 ZFP1 1 99.0 Highly correlated
107 ZFP82 1 99.0 Highly correlated
108 ZNF124 1 43.0 Weakly correlated
109 ZNF135 1 94.0 Moderately correlated
110 ZNF157 1 99.0 Highly correlated
111 ZNF182 1 99.0 Highly correlated
112 ZNF224 1 69.0 Weakly correlated
113 ZNF230 1 28.9 Weakly correlated
114 ZNF267 1 43.0 Weakly correlated
115 ZNF26 1 99.0 Highly correlated
116 ZNF334 1 99.0 Highly correlated
117 ZNF354C 1 99.0 Highly correlated
118 ZNF420 1 94.0 Moderately correlated
119 ZNF44 1 43.0 Weakly correlated
120 ZNF483 1 99.0 Highly correlated
121 ZNF510 1 99.0 Highly correlated
122 ZNF543 1 99.0 Highly correlated
123 ZNF559 1 74.0 Weakly correlated
124 ZNF567 1 99.0 Highly correlated
125 ZNF571 1 99.0 Highly correlated
126 ZNF573 1 94.0 Moderately correlated
127 ZNF611 1 19.6 Weakly correlated
128 ZNF614 1 99.0 Highly correlated
129 ZNF626 1 0.0 Weakly correlated
130 ZNF641 1 99.0 Highly correlated
131 ZNF658 1 99.0 Highly correlated
132 ZNF675 1 8.6 Weakly correlated
133 ZNF705E 1 0.0 Weakly correlated
134 ZNF765 1 8.6 Weakly correlated
135 ZNF780A 1 43.0 Weakly correlated
136 ZNF780B 1 74.0 Weakly correlated
137 ZNF799 1 43.0 Weakly correlated
138 ZNF805 1 99.0 Highly correlated
139 ZNF808 1 19.6 Weakly correlated
140 ZNF846 1 74.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF333 123 99.0 Highly correlated
2 ZNF383 72 99.0 Highly correlated
3 ZNF479 69 6.4 Weakly correlated
4 ZNF263 40 180.0 Weakly correlated
5 ZNF534 31 19.6 Weakly correlated
6 ZNF12 31 99.0 Highly correlated
7 ZNF793 22 99.0 Highly correlated
8 ZNF723 17 15.2 Weakly correlated
9 ZNF766 17 43.0 Weakly correlated
10 ZIM3 17 87.0 Moderately correlated
11 ZNF680 16 28.9 Weakly correlated
12 ZNF554 12 99.0 Highly correlated
13 ZNF320 7 28.9 Weakly correlated
14 ZNF549 7 87.0 Moderately correlated
15 ZNF18 7 160.0 Weakly correlated
16 ZNF566 7 99.0 Highly correlated
17 ZNF382 6 99.0 Highly correlated
18 ZNF197 6 99.0 Highly correlated
19 ZNF485 6 94.0 Moderately correlated
20 ZFP37 6 99.0 Highly correlated
21 ZNF257 5 0.0 Weakly correlated
22 ZNF506 5 28.9 Weakly correlated
23 ZNF735 4 28.9 Weakly correlated
24 ZFP69B 4 99.0 Highly correlated
25 ZKSCAN5 4 160.0 Weakly correlated
26 ZNF701 3 28.9 Weakly correlated
27 ZKSCAN1 3 160.0 Weakly correlated
28 ZNF584 3 99.0 Highly correlated
29 ZNF528 3 43.0 Weakly correlated
30 ZNF350 3 99.0 Highly correlated
31 ZNF585A 3 99.0 Highly correlated
32 ZNF597 3 94.0 Moderately correlated
33 ZNF8 2 99.0 Highly correlated
34 ZNF324 2 99.0 Highly correlated
35 ZNF175 2 94.0 Moderately correlated
36 ZNF2 2 99.0 Highly correlated
37 ZNF75A 2 94.0 Moderately correlated
38 ZNF605 2 99.0 Highly correlated
39 ZNF589 2 28.9 Weakly correlated
40 ZNF273 2 28.9 Weakly correlated
41 ZNF189 2 99.0 Highly correlated
42 ZFP57 2 87.0 Moderately correlated
43 ZNF101 2 43.0 Weakly correlated
44 ZNF671 2 94.0 Moderately correlated
45 ZNF707 2 74.0 Weakly correlated
46 ZNF75D 2 94.0 Moderately correlated
47 ZNF140 2 99.0 Highly correlated
48 ZNF141 2 43.0 Weakly correlated
49 ZNF317 2 99.0 Highly correlated
50 ZNF274 1 99.0 Highly correlated
51 ZNF34 1 99.0 Highly correlated
52 ZNF251 1 94.0 Moderately correlated
53 ZNF573 1 94.0 Moderately correlated
54 ZNF157 1 99.0 Highly correlated
55 ZFP14 1 99.0 Highly correlated
56 ZNF136 1 74.0 Weakly correlated
57 ZNF418 1 43.0 Weakly correlated
58 ZNF133 1 99.0 Highly correlated
59 ZFP28 1 99.0 Highly correlated
60 ZNF44 1 43.0 Weakly correlated
61 ZNF26 1 99.0 Highly correlated
62 ZNF816 1 28.9 Weakly correlated
63 ZNF429 1 28.9 Weakly correlated
64 ZNF93 1 8.6 Weakly correlated
65 ZNF789 1 99.0 Highly correlated
66 ZNF626 1 0.0 Weakly correlated
67 ZNF337 1 43.0 Weakly correlated
68 ZNF705B 1 28.9 Weakly correlated
69 ZNF483 1 99.0 Highly correlated
70 ZNF41 1 99.0 Highly correlated
71 ZNF33A 1 99.0 Highly correlated
72 ZNF792 1 94.0 Moderately correlated
73 ZNF679 1 28.9 Weakly correlated
74 ZNF705D 1 28.9 Weakly correlated
75 ZNF224 1 69.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF263 180.0 Weakly correlated
2 ZNF383 99.0 Highly correlated
3 ZNF554 99.0 Highly correlated
4 ZNF566 99.0 Highly correlated
5 ZNF793 99.0 Highly correlated