ZRdb KZFP & Repeats
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LTR_MLT1J1

  • Name
    MLT1J1
  • Repbase
    MLT1J1
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001019
Description :

MLT1J1 has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalianapparent LTR retrotransposon) element is derived from an ERV (EndogenousRetrovirus), but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcagagactggctagctgttcaccaaacccgtttcctcttcttcctgggcacacagctagactacatttcccagcctcccttgcagttaggtgtggccatgtgactgagttctggccaatggaatgtgagcagaagtgatgtgtgccacttccaggcctggcccataaaaacctcccatgcatnctcctctctattctctcttccctctctgctggctggatgtcgacgcccagggcgaccttggaagccacgtgttgaagatggcagagcctccgtcagcctgggtccctgaatgactgcgtggagcagagccccccccnacccccccagcacatccaattggactttacgtgagcgagaaataaacttctattgtgttaagccactgagattttggggtttatctgttacagcagctagcgttaccttaactaataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 32 99.0 Highly correlated
2 ZNF584 14 99.0 Highly correlated
3 ZNF766 9 43.0 Weakly correlated
4 ZNF317 9 99.0 Highly correlated
5 ZNF680 8 28.9 Weakly correlated
6 ZIM3 7 87.0 Moderately correlated
7 ZNF705B 6 28.9 Weakly correlated
8 ZNF589 5 28.9 Weakly correlated
9 ZNF723 5 15.2 Weakly correlated
10 ZNF101 4 43.0 Weakly correlated
11 ZFP69B 4 99.0 Highly correlated
12 ZNF705D 4 28.9 Weakly correlated
13 ZNF175 4 94.0 Moderately correlated
14 ZKSCAN8 4 160.0 Weakly correlated
15 ZNF197 4 99.0 Highly correlated
16 ZNF263 3 180.0 Weakly correlated
17 ZKSCAN1 3 160.0 Weakly correlated
18 ZNF324 3 99.0 Highly correlated
19 ZNF350 3 99.0 Highly correlated
20 ZFP69 2 99.0 Highly correlated
21 ZNF558 2 99.0 Highly correlated
22 ZNF169 2 94.0 Moderately correlated
23 ZNF534 2 19.6 Weakly correlated
24 ZNF18 2 160.0 Weakly correlated
25 ZNF75D 2 94.0 Moderately correlated
26 ZFP37 2 99.0 Highly correlated
27 ZNF429 2 28.9 Weakly correlated
28 ZNF394 2 99.0 Highly correlated
29 ZNF2 2 99.0 Highly correlated
30 ZNF92 1 28.9 Weakly correlated
31 ZNF823 1 43.0 Weakly correlated
32 ZNF707 1 74.0 Weakly correlated
33 ZNF765 1 8.6 Weakly correlated
34 ZNF780A 1 43.0 Weakly correlated
35 ZNF792 1 94.0 Moderately correlated
36 ZNF679 1 28.9 Weakly correlated
37 ZNF610 1 28.9 Weakly correlated
38 ZNF573 1 94.0 Moderately correlated
39 ZNF571 1 99.0 Highly correlated
40 ZNF554 1 99.0 Highly correlated
41 ZNF528 1 43.0 Weakly correlated
42 ZNF519 1 19.6 Weakly correlated
43 ZNF486 1 8.6 Weakly correlated
44 ZNF354C 1 99.0 Highly correlated
45 ZNF257 1 0.0 Weakly correlated
46 ZNF253 1 19.6 Weakly correlated
47 ZNF251 1 94.0 Moderately correlated
48 ZNF141 1 43.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF680 5 28.9 Weakly correlated
2 ZIM3 4 87.0 Moderately correlated
3 ZNF705B 3 28.9 Weakly correlated
4 ZNF766 3 43.0 Weakly correlated
5 ZNF534 2 19.6 Weakly correlated
6 ZFP69 2 99.0 Highly correlated
7 ZNF705D 2 28.9 Weakly correlated
8 ZNF723 1 15.2 Weakly correlated
9 ZNF573 1 94.0 Moderately correlated
10 ZNF317 1 99.0 Highly correlated
11 ZKSCAN1 1 160.0 Weakly correlated
12 ZNF429 1 28.9 Weakly correlated
13 ZNF263 1 180.0 Weakly correlated
14 ZNF823 1 43.0 Weakly correlated
15 ZNF169 1 94.0 Moderately correlated
16 ZNF707 1 74.0 Weakly correlated
17 ZNF589 1 28.9 Weakly correlated
18 ZFP37 1 99.0 Highly correlated
19 ZNF257 1 0.0 Weakly correlated
20 ZNF780A 1 43.0 Weakly correlated
21 ZNF101 1 43.0 Weakly correlated
22 ZNF382 1 99.0 Highly correlated
23 ZNF792 1 94.0 Moderately correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats