ZRdb KZFP & Repeats
...

LTR_MLT1J

  • Name
    MLT1J
  • Repbase
    MLT1J
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001018
Description :

MLT1J has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalianapparent LTR retrotransposon) element is derived from an ERV (EndogenousRetrovirus), but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcagagactgctagttgtcccccaatatccattctccccttcttccttagtaatagaacccccgatttttagctgggcacatggccgcccagaataaagactacatttcccagcctcccttgcagctaggtgtggccatgtgactaagttctggccaatgggatgtaagcggaagtgncgtgtgcaacttccgggaagtgtccttaaagggagggggcgtgcccttcttttccccttcctccttcctgctgnctggaatgcggacgtgatggctggagctcnagcagccatcttggaccatgaggtggaagccacgtgctgaggatggcggagcaacaagatagaaggagcctgggtccctgatgaccgtggagccgccataccagccctggactgcctacctccggacttcttttacgtgagagagaaataaacttctatcttgtttaagccactgttattttgggttttctgttactcgcagccgaacctaatcctaactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
...
Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 638 99.0 Highly correlated
2 ZNF766 524 43.0 Weakly correlated
3 ZIM3 489 87.0 Moderately correlated
4 ZNF92 300 28.9 Weakly correlated
5 ZNF263 247 180.0 Weakly correlated
6 ZNF420 240 94.0 Moderately correlated
7 ZNF589 229 28.9 Weakly correlated
8 ZNF175 214 94.0 Moderately correlated
9 ZNF197 176 99.0 Highly correlated
10 ZNF394 164 99.0 Highly correlated
11 ZNF584 145 99.0 Highly correlated
12 ZNF680 129 28.9 Weakly correlated
13 ZNF317 124 99.0 Highly correlated
14 ZNF479 122 6.4 Weakly correlated
15 ZKSCAN8 105 160.0 Weakly correlated
16 ZNF383 94 99.0 Highly correlated
17 ZFP37 91 99.0 Highly correlated
18 ZKSCAN1 87 160.0 Weakly correlated
19 ZNF566 87 99.0 Highly correlated
20 ZNF679 82 28.9 Weakly correlated
21 ZNF2 81 99.0 Highly correlated
22 ZNF554 77 99.0 Highly correlated
23 ZNF534 75 19.6 Weakly correlated
24 ZFP69B 65 99.0 Highly correlated
25 ZNF793 62 99.0 Highly correlated
26 ZNF610 58 28.9 Weakly correlated
27 ZNF18 56 160.0 Weakly correlated
28 ZNF324 56 99.0 Highly correlated
29 ZNF705B 55 28.9 Weakly correlated
30 ZNF723 54 15.2 Weakly correlated
31 ZNF558 50 99.0 Highly correlated
32 ZNF101 49 43.0 Weakly correlated
33 ZNF320 48 28.9 Weakly correlated
34 ZNF486 48 8.6 Weakly correlated
35 ZNF528 48 43.0 Weakly correlated
36 ZNF705D 42 28.9 Weakly correlated
37 ZNF257 39 0.0 Weakly correlated
38 ZNF701 35 28.9 Weakly correlated
39 ZNF251 33 94.0 Moderately correlated
40 ZNF28 32 28.9 Weakly correlated
41 ZNF350 28 99.0 Highly correlated
42 ZNF485 24 94.0 Moderately correlated
43 ZNF75D 22 94.0 Moderately correlated
44 ZNF597 21 94.0 Moderately correlated
45 ZNF274 20 99.0 Highly correlated
46 ZNF490 20 43.0 Weakly correlated
47 ZNF549 18 87.0 Moderately correlated
48 ZNF429 17 28.9 Weakly correlated
49 ZNF506 17 28.9 Weakly correlated
50 ZNF133 16 99.0 Highly correlated
51 ZNF333 16 99.0 Highly correlated
52 ZNF582 16 99.0 Highly correlated
53 ZNF140 14 99.0 Highly correlated
54 ZNF75A 14 94.0 Moderately correlated
55 ZNF141 13 43.0 Weakly correlated
56 ZNF547 12 74.0 Weakly correlated
57 ZNF823 12 43.0 Weakly correlated
58 ZNF682 11 28.9 Weakly correlated
59 ZFP57 10 87.0 Moderately correlated
60 ZNF440 10 28.9 Weakly correlated
61 ZNF468 10 28.9 Weakly correlated
62 ZNF519 10 19.6 Weakly correlated
63 ZNF585A 10 99.0 Highly correlated
64 ZNF735 10 28.9 Weakly correlated
65 ZNF169 9 94.0 Moderately correlated
66 ZNF264 9 99.0 Highly correlated
67 ZNF331 9 94.0 Moderately correlated
68 ZNF41 9 99.0 Highly correlated
69 ZNF425 9 94.0 Moderately correlated
70 ZNF707 9 74.0 Weakly correlated
71 ZNF182 8 99.0 Highly correlated
72 ZNF695 8 28.9 Weakly correlated
73 ZNF273 7 28.9 Weakly correlated
74 ZNF282 7 319.0 Weakly correlated
75 ZNF33A 7 99.0 Highly correlated
76 ZNF510 7 99.0 Highly correlated
77 ZNF585B 7 99.0 Highly correlated
78 ZNF778 7 74.0 Weakly correlated
79 ZFP28 6 99.0 Highly correlated
80 ZKSCAN5 6 160.0 Weakly correlated
81 ZNF17 6 69.0 Weakly correlated
82 ZNF284 6 43.0 Weakly correlated
83 ZNF471 6 94.0 Moderately correlated
84 ZNF563 6 28.9 Weakly correlated
85 ZNF780A 6 43.0 Weakly correlated
86 ZNF12 5 99.0 Highly correlated
87 ZNF189 5 99.0 Highly correlated
88 ZNF347 5 43.0 Weakly correlated
89 ZNF418 5 43.0 Weakly correlated
90 ZNF436 5 180.0 Weakly correlated
91 ZNF441 5 43.0 Weakly correlated
92 ZNF730 5 19.6 Weakly correlated
93 ZNF792 5 94.0 Moderately correlated
94 ZFP30 4 99.0 Highly correlated
95 ZNF26 4 99.0 Highly correlated
96 ZNF334 4 99.0 Highly correlated
97 ZNF337 4 43.0 Weakly correlated
98 ZNF530 4 28.9 Weakly correlated
99 ZNF565 4 99.0 Highly correlated
100 ZNF607 4 43.0 Weakly correlated
101 ZNF684 4 99.0 Highly correlated
102 ZNF786 4 99.0 Highly correlated
103 ZNF93 4 8.6 Weakly correlated
104 ZFP69 3 99.0 Highly correlated
105 ZNF100 3 28.9 Weakly correlated
106 ZNF343 3 74.0 Weakly correlated
107 ZNF480 3 43.0 Weakly correlated
108 ZNF483 3 99.0 Highly correlated
109 ZNF559 3 74.0 Weakly correlated
110 ZNF641 3 99.0 Highly correlated
111 ZNF808 3 19.6 Weakly correlated
112 ZNF136 2 74.0 Weakly correlated
113 ZNF184 2 99.0 Highly correlated
114 ZNF224 2 69.0 Weakly correlated
115 ZNF230 2 28.9 Weakly correlated
116 ZNF248 2 99.0 Highly correlated
117 ZNF578 2 15.2 Weakly correlated
118 ZNF671 2 94.0 Moderately correlated
119 ZNF674 2 99.0 Highly correlated
120 ZNF675 2 8.6 Weakly correlated
121 ZNF705E 2 0.0 Weakly correlated
122 ZNF716 2 19.6 Weakly correlated
123 ZNF727 2 19.6 Weakly correlated
124 ZNF765 2 8.6 Weakly correlated
125 ZNF777 2 319.0 Weakly correlated
126 ZNF84 2 99.0 Highly correlated
127 ZNF878 2 43.0 Weakly correlated
128 ZNF8 2 99.0 Highly correlated
129 ZNF91 2 6.0 Weakly correlated
130 PRDM9 1 0.0 Weakly correlated
131 ZKSCAN2 1 180.0 Weakly correlated
132 ZNF10 1 99.0 Highly correlated
133 ZNF124 1 43.0 Weakly correlated
134 ZNF135 1 94.0 Moderately correlated
135 ZNF154 1 94.0 Moderately correlated
136 ZNF157 1 99.0 Highly correlated
137 ZNF202 1 160.0 Weakly correlated
138 ZNF222 1 43.0 Weakly correlated
139 ZNF267 1 43.0 Weakly correlated
140 ZNF283 1 99.0 Highly correlated
141 ZNF287 1 99.0 Highly correlated
142 ZNF304 1 99.0 Highly correlated
143 ZNF33B 1 99.0 Highly correlated
144 ZNF417 1 28.9 Weakly correlated
145 ZNF430 1 19.6 Weakly correlated
146 ZNF433 1 43.0 Weakly correlated
147 ZNF445 1 99.0 Highly correlated
148 ZNF44 1 43.0 Weakly correlated
149 ZNF525 1 19.6 Weakly correlated
150 ZNF527 1 99.0 Highly correlated
151 ZNF544 1 0.0 Weakly correlated
152 ZNF557 1 15.2 Weakly correlated
153 ZNF568 1 99.0 Highly correlated
154 ZNF587 1 28.9 Weakly correlated
155 ZNF605 1 99.0 Highly correlated
156 ZNF620 1 99.0 Highly correlated
157 ZNF626 1 0.0 Weakly correlated
158 ZNF667 1 99.0 Highly correlated
159 ZNF669 1 43.0 Weakly correlated
160 ZNF700 1 28.9 Weakly correlated
161 ZNF776 1 43.0 Weakly correlated
162 ZNF77 1 87.0 Moderately correlated
163 ZNF789 1 99.0 Highly correlated
164 ZNF799 1 43.0 Weakly correlated
165 ZNF7 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZIM3 248 87.0 Moderately correlated
2 ZNF383 91 99.0 Highly correlated
3 ZNF566 85 99.0 Highly correlated
4 ZNF479 73 6.4 Weakly correlated
5 ZNF766 54 43.0 Weakly correlated
6 ZNF263 48 180.0 Weakly correlated
7 ZNF534 30 19.6 Weakly correlated
8 ZNF680 25 28.9 Weakly correlated
9 ZNF793 24 99.0 Highly correlated
10 ZNF92 23 28.9 Weakly correlated
11 ZNF420 20 94.0 Moderately correlated
12 ZNF723 17 15.2 Weakly correlated
13 ZNF589 16 28.9 Weakly correlated
14 ZNF554 15 99.0 Highly correlated
15 ZNF485 13 94.0 Moderately correlated
16 ZNF333 13 99.0 Highly correlated
17 ZNF175 12 94.0 Moderately correlated
18 ZNF582 11 99.0 Highly correlated
19 ZNF382 11 99.0 Highly correlated
20 ZNF197 10 99.0 Highly correlated
21 ZNF320 9 28.9 Weakly correlated
22 ZNF317 9 99.0 Highly correlated
23 ZNF257 9 0.0 Weakly correlated
24 ZNF141 8 43.0 Weakly correlated
25 ZNF506 8 28.9 Weakly correlated
26 ZNF324 8 99.0 Highly correlated
27 ZNF528 8 43.0 Weakly correlated
28 ZNF584 8 99.0 Highly correlated
29 ZNF75D 7 94.0 Moderately correlated
30 ZNF101 7 43.0 Weakly correlated
31 ZFP37 7 99.0 Highly correlated
32 ZNF28 6 28.9 Weakly correlated
33 ZNF701 6 28.9 Weakly correlated
34 ZNF350 6 99.0 Highly correlated
35 ZNF705D 6 28.9 Weakly correlated
36 ZNF735 6 28.9 Weakly correlated
37 ZNF429 5 28.9 Weakly correlated
38 ZNF705B 5 28.9 Weakly correlated
39 ZNF12 5 99.0 Highly correlated
40 ZFP69B 5 99.0 Highly correlated
41 ZNF468 5 28.9 Weakly correlated
42 ZNF610 5 28.9 Weakly correlated
43 ZNF585A 4 99.0 Highly correlated
44 ZNF684 4 99.0 Highly correlated
45 ZNF490 4 43.0 Weakly correlated
46 ZNF679 4 28.9 Weakly correlated
47 ZFP57 4 87.0 Moderately correlated
48 ZNF41 4 99.0 Highly correlated
49 ZNF597 4 94.0 Moderately correlated
50 ZNF530 4 28.9 Weakly correlated
51 ZNF18 4 160.0 Weakly correlated
52 ZNF695 3 28.9 Weakly correlated
53 ZNF75A 3 94.0 Moderately correlated
54 ZNF2 3 99.0 Highly correlated
55 ZNF440 3 28.9 Weakly correlated
56 ZNF273 3 28.9 Weakly correlated
57 ZNF486 3 8.6 Weakly correlated
58 ZNF549 3 87.0 Moderately correlated
59 ZNF264 3 99.0 Highly correlated
60 ZNF780A 3 43.0 Weakly correlated
61 ZNF707 2 74.0 Weakly correlated
62 ZNF251 2 94.0 Moderately correlated
63 ZNF823 2 43.0 Weakly correlated
64 ZNF33A 2 99.0 Highly correlated
65 ZKSCAN1 2 160.0 Weakly correlated
66 ZNF418 2 43.0 Weakly correlated
67 ZNF133 2 99.0 Highly correlated
68 ZNF347 2 43.0 Weakly correlated
69 ZNF778 2 74.0 Weakly correlated
70 ZNF189 2 99.0 Highly correlated
71 ZNF675 2 8.6 Weakly correlated
72 ZNF669 1 43.0 Weakly correlated
73 ZFP28 1 99.0 Highly correlated
74 ZNF789 1 99.0 Highly correlated
75 ZNF727 1 19.6 Weakly correlated
76 ZKSCAN8 1 160.0 Weakly correlated
77 ZNF10 1 99.0 Highly correlated
78 ZKSCAN5 1 160.0 Weakly correlated
79 ZNF671 1 94.0 Moderately correlated
80 ZNF674 1 99.0 Highly correlated
81 ZNF510 1 99.0 Highly correlated
82 ZNF641 1 99.0 Highly correlated
83 ZNF559 1 74.0 Weakly correlated
84 ZNF337 1 43.0 Weakly correlated
85 ZNF343 1 74.0 Weakly correlated
86 ZNF776 1 43.0 Weakly correlated
87 ZNF483 1 99.0 Highly correlated
88 ZNF626 1 0.0 Weakly correlated
89 ZNF587 1 28.9 Weakly correlated
90 ZNF417 1 28.9 Weakly correlated
91 ZNF394 1 99.0 Highly correlated
92 ZNF480 1 43.0 Weakly correlated
93 ZNF558 1 99.0 Highly correlated
94 ZNF154 1 94.0 Moderately correlated
95 ZNF248 1 99.0 Highly correlated
96 PRDM9 1 0.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Highly correlated
2 ZIM3 87.0 Moderately correlated
3 ZNF141 43.0 Weakly correlated
4 ZNF175 94.0 Moderately correlated
5 ZNF197 99.0 Highly correlated
6 ZNF257 0.0 Weakly correlated
7 ZNF28 28.9 Weakly correlated
8 ZNF317 99.0 Highly correlated
9 ZNF383 99.0 Highly correlated
10 ZNF566 99.0 Highly correlated
11 ZNF584 99.0 Highly correlated
12 ZNF589 28.9 Weakly correlated
13 ZNF75D 94.0 Moderately correlated