ZRdb KZFP & Repeats
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LTR_MLT1J-INT

  • Name
    MLT1J-INT
  • Repbase
    MLT1J-int
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001021
Description :

This MaLR internal region is usually associated with MLT1J2 / MLT1JLTRs. Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
gaaattggtacctagaagtggggtgctgccataacaaaaacctaaaatatgtggcattggcttagcggtcgggcggcgggcggcgaggaaacngatatcgnaggctggaaagntggngacccntgttatgcagtggcaaaacatttggtaaaactgtcgcctgcgataacttggaaggcagaccacgtgcctactgagcctgtagctctaggggaagnggttggaaaaantcagaatgttagtgtgtgttggctgctnctngctgcntttagcaaggtattacaagaaagagatgagctcaggaaagaattggccggtttgcaagcagaaatgaaagggaatagagagagtccagaaatttggggccttgcagggttggaaaagccaactgcttctgnaccccaaacagtaagagataagactgaaaaaggctttgagcaacaaaggcccattaagacttctcgccagacaaagggactcagccctgcggcaaagatcagattaagggtgttgccttcccacccaagcctattgtttcagatggcctcaaggtagccgccattaagttgagagagaggggatgggcagagcacagaggccagnaaataaaagantaaagcaggcttgagaactatgtctaggaaagaactttggntgtggttactggcacatggaactgactggaagcaaatagatcagaagcctactaagtttttgagggaattgtattgccaaagaaaccacaagcctggcctgnaaaagcctgtgactgttcganccctaaaacaacccttgggcccccaaacttgcaccagcaggaagcgggctgcgaaagctgtgcagcccccaaggagggcatactccccaacgcccacttcagatgtggccanggaggataatggacaaggaagaacctcccagagggcggagccaggggccacggagaacaatggacaagggagttcctcccagagagcagaatcagggtctaatcaaggaacttcccccactgccagggcagggggtcttcacaatncctgcccagcaggatttcanaattgctatggaccagtgactgctgtgtgtctcccattcttcccttttccgaatgggagtttttattgcggttatcctgtccctgctccaccattgtatattgggtgtgtggggggcagataacttgtcttttagttcataggtcgccggaccacgaggagccacatccggacctgatggagaggactgcgcatcacccagagatcctggactttgagctggatgcagtaactggatgggactttgggttgtctcccttggggagggggtgagtgtgttctatgtgtgggaagaagggtgnaacggatatttggtggccagaggggcagac
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 41 99.0 Highly correlated
2 ZNF766 26 43.0 Weakly correlated
3 ZNF707 22 74.0 Weakly correlated
4 ZNF584 22 99.0 Highly correlated
5 ZNF317 13 99.0 Highly correlated
6 ZIM3 12 87.0 Moderately correlated
7 ZNF589 10 28.9 Weakly correlated
8 ZNF679 10 28.9 Weakly correlated
9 ZNF793 10 99.0 Highly correlated
10 ZNF175 8 94.0 Moderately correlated
11 ZNF197 8 99.0 Highly correlated
12 ZKSCAN8 7 160.0 Weakly correlated
13 ZNF680 7 28.9 Weakly correlated
14 ZNF274 7 99.0 Highly correlated
15 ZNF263 6 180.0 Weakly correlated
16 ZNF701 6 28.9 Weakly correlated
17 ZFP37 6 99.0 Highly correlated
18 ZNF554 6 99.0 Highly correlated
19 ZNF705B 5 28.9 Weakly correlated
20 ZNF394 5 99.0 Highly correlated
21 ZKSCAN1 5 160.0 Weakly correlated
22 ZNF705D 5 28.9 Weakly correlated
23 ZNF534 4 19.6 Weakly correlated
24 ZNF558 4 99.0 Highly correlated
25 ZNF75D 4 94.0 Moderately correlated
26 ZNF182 4 99.0 Highly correlated
27 ZNF723 4 15.2 Weakly correlated
28 ZNF479 4 6.4 Weakly correlated
29 ZNF549 3 87.0 Moderately correlated
30 ZNF547 2 74.0 Weakly correlated
31 ZNF674 2 99.0 Highly correlated
32 ZNF597 2 94.0 Moderately correlated
33 ZNF429 2 28.9 Weakly correlated
34 ZNF2 2 99.0 Highly correlated
35 ZNF257 2 0.0 Weakly correlated
36 ZNF808 2 19.6 Weakly correlated
37 ZNF18 2 160.0 Weakly correlated
38 ZNF823 2 43.0 Weakly correlated
39 ZNF140 2 99.0 Highly correlated
40 ZNF695 1 28.9 Weakly correlated
41 ZNF81 1 99.0 Highly correlated
42 ZNF684 1 99.0 Highly correlated
43 ZNF845 1 28.9 Weakly correlated
44 ZNF91 1 6.0 Weakly correlated
45 ZNF92 1 28.9 Weakly correlated
46 ZNF506 1 28.9 Weakly correlated
47 ZNF41 1 99.0 Highly correlated
48 ZFP69B 1 99.0 Highly correlated
49 ZNF124 1 43.0 Weakly correlated
50 ZNF133 1 99.0 Highly correlated
51 ZNF157 1 99.0 Highly correlated
52 ZNF189 1 99.0 Highly correlated
53 ZNF224 1 69.0 Weakly correlated
54 ZNF254 1 43.0 Weakly correlated
55 ZNF320 1 28.9 Weakly correlated
56 ZNF324 1 99.0 Highly correlated
57 ZNF605 1 99.0 Highly correlated
58 ZNF425 1 94.0 Moderately correlated
59 ZNF44 1 43.0 Weakly correlated
60 ZNF486 1 8.6 Weakly correlated
61 ZNF490 1 43.0 Weakly correlated
62 ZNF510 1 99.0 Highly correlated
63 ZNF564 1 74.0 Weakly correlated
64 ZNF573 1 94.0 Moderately correlated
65 ZNF585A 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF707 9 74.0 Weakly correlated
2 ZNF766 6 43.0 Weakly correlated
3 ZNF793 5 99.0 Highly correlated
4 ZIM3 4 87.0 Moderately correlated
5 ZNF680 4 28.9 Weakly correlated
6 ZFP37 4 99.0 Highly correlated
7 ZNF263 3 180.0 Weakly correlated
8 ZNF554 3 99.0 Highly correlated
9 ZNF534 3 19.6 Weakly correlated
10 ZNF584 2 99.0 Highly correlated
11 ZNF75D 2 94.0 Moderately correlated
12 ZNF317 2 99.0 Highly correlated
13 ZNF674 2 99.0 Highly correlated
14 ZNF382 2 99.0 Highly correlated
15 ZKSCAN1 1 160.0 Weakly correlated
16 ZNF589 1 28.9 Weakly correlated
17 ZNF823 1 43.0 Weakly correlated
18 ZNF597 1 94.0 Moderately correlated
19 ZNF605 1 99.0 Highly correlated
20 ZNF257 1 0.0 Weakly correlated
21 ZNF723 1 15.2 Weakly correlated
22 ZNF274 1 99.0 Highly correlated
23 ZNF684 1 99.0 Highly correlated
24 ZNF679 1 28.9 Weakly correlated
25 ZNF549 1 87.0 Moderately correlated
26 ZNF506 1 28.9 Weakly correlated
27 ZNF175 1 94.0 Moderately correlated
28 ZNF705D 1 28.9 Weakly correlated
29 ZNF197 1 99.0 Highly correlated
30 ZNF189 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats