ZRdb KZFP & Repeats
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LTR_MLT1I

  • Name
    MLT1I
  • Repbase
    MLT1I
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001017
Description :

MLT1I has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalianapparent LTR retrotransposon) element is derived from an ERV (EndogenousRetrovirus), but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtagtcattagtgctgttcaccaaatatttccggctctctnccttccgggcacatggtaggattgcacttccccgcccccttgaagttaggcgtggccatgtgacttgctttggccaatgaaatgtgagcggaagtgacgtgtgtcacttccgggcggaagctttaagagccagtgcgtgattcgccacgttcccctttccctctgccacggcgaccggcaatgttccagatggtggctgctccgtcagcctgggtcccggagtgaggacgacgtggagcagagcccccagccgacccgcgatggacatgtagcatgagcgagaaataaacctttgttgttttaagccactgagatttgggggttgtttgttaccgcagcataacctagcctatcctgactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 488 99.0 Highly correlated
2 ZNF766 251 43.0 Weakly correlated
3 ZNF12 185 99.0 Highly correlated
4 ZNF263 157 180.0 Weakly correlated
5 ZKSCAN1 130 160.0 Weakly correlated
6 ZNF589 123 28.9 Weakly correlated
7 ZNF394 111 99.0 Highly correlated
8 ZNF175 105 94.0 Moderately correlated
9 ZNF317 96 99.0 Highly correlated
10 ZFP37 90 99.0 Highly correlated
11 ZNF584 82 99.0 Highly correlated
12 ZNF2 67 99.0 Highly correlated
13 ZNF680 66 28.9 Weakly correlated
14 ZIM3 65 87.0 Moderately correlated
15 ZNF554 58 99.0 Highly correlated
16 ZNF18 56 160.0 Weakly correlated
17 ZFP69B 55 99.0 Highly correlated
18 ZNF324 53 99.0 Highly correlated
19 ZNF679 52 28.9 Weakly correlated
20 ZNF197 49 99.0 Highly correlated
21 ZNF723 49 15.2 Weakly correlated
22 ZKSCAN8 45 160.0 Weakly correlated
23 ZNF101 44 43.0 Weakly correlated
24 ZNF479 42 6.4 Weakly correlated
25 ZNF558 42 99.0 Highly correlated
26 ZNF528 39 43.0 Weakly correlated
27 ZNF597 34 94.0 Moderately correlated
28 ZNF333 33 99.0 Highly correlated
29 ZNF610 32 28.9 Weakly correlated
30 ZNF793 32 99.0 Highly correlated
31 ZNF534 31 19.6 Weakly correlated
32 ZNF701 28 28.9 Weakly correlated
33 ZNF92 25 28.9 Weakly correlated
34 ZNF251 22 94.0 Moderately correlated
35 ZFP57 19 87.0 Moderately correlated
36 ZNF274 19 99.0 Highly correlated
37 ZNF707 19 74.0 Weakly correlated
38 ZNF140 18 99.0 Highly correlated
39 ZNF705B 17 28.9 Weakly correlated
40 ZNF485 16 94.0 Moderately correlated
41 ZNF490 16 43.0 Weakly correlated
42 ZNF506 14 28.9 Weakly correlated
43 RBAK 13 99.0 Highly correlated
44 ZNF257 13 0.0 Weakly correlated
45 ZNF320 13 28.9 Weakly correlated
46 ZNF75D 13 94.0 Moderately correlated
47 ZNF792 13 94.0 Moderately correlated
48 ZNF486 11 8.6 Weakly correlated
49 ZNF549 11 87.0 Moderately correlated
50 ZNF705D 11 28.9 Weakly correlated
51 ZNF133 10 99.0 Highly correlated
52 ZNF331 10 94.0 Moderately correlated
53 ZNF547 10 74.0 Weakly correlated
54 ZNF8 10 99.0 Highly correlated
55 ZNF264 8 99.0 Highly correlated
56 ZNF585B 8 99.0 Highly correlated
57 ZNF735 8 28.9 Weakly correlated
58 ZNF28 7 28.9 Weakly correlated
59 ZNF682 7 28.9 Weakly correlated
60 ZNF778 7 74.0 Weakly correlated
61 ZNF141 6 43.0 Weakly correlated
62 ZNF563 6 28.9 Weakly correlated
63 ZNF695 6 28.9 Weakly correlated
64 ZNF273 5 28.9 Weakly correlated
65 ZNF425 5 94.0 Moderately correlated
66 ZNF519 5 19.6 Weakly correlated
67 ZNF823 5 43.0 Weakly correlated
68 ZNF224 4 69.0 Weakly correlated
69 ZNF283 4 99.0 Highly correlated
70 ZNF441 4 43.0 Weakly correlated
71 ZNF730 4 19.6 Weakly correlated
72 ZNF786 4 99.0 Highly correlated
73 ZNF808 4 19.6 Weakly correlated
74 ZFP69 3 99.0 Highly correlated
75 ZNF41 3 99.0 Highly correlated
76 ZNF440 3 28.9 Weakly correlated
77 ZNF585A 3 99.0 Highly correlated
78 ZNF671 3 94.0 Moderately correlated
79 ZNF716 3 19.6 Weakly correlated
80 ZNF85 3 28.9 Weakly correlated
81 ZNF93 3 8.6 Weakly correlated
82 ZFP30 2 99.0 Highly correlated
83 ZNF132 2 94.0 Moderately correlated
84 ZNF157 2 99.0 Highly correlated
85 ZNF169 2 94.0 Moderately correlated
86 ZNF284 2 43.0 Weakly correlated
87 ZNF33A 2 99.0 Highly correlated
88 ZNF350 2 99.0 Highly correlated
89 ZNF429 2 28.9 Weakly correlated
90 ZNF433 2 43.0 Weakly correlated
91 ZNF436 2 180.0 Weakly correlated
92 ZNF468 2 28.9 Weakly correlated
93 ZNF471 2 94.0 Moderately correlated
94 ZNF611 2 19.6 Weakly correlated
95 ZNF616 2 43.0 Weakly correlated
96 ZNF626 2 0.0 Weakly correlated
97 ZNF641 2 99.0 Highly correlated
98 ZNF675 2 8.6 Weakly correlated
99 ZNF684 2 99.0 Highly correlated
100 ZNF75A 2 94.0 Moderately correlated
101 ZNF780A 2 43.0 Weakly correlated
102 ZNF816 2 28.9 Weakly correlated
103 ZFP82 1 99.0 Highly correlated
104 ZKSCAN3 1 99.0 Highly correlated
105 ZKSCAN5 1 160.0 Weakly correlated
106 ZNF100 1 28.9 Weakly correlated
107 ZNF124 1 43.0 Weakly correlated
108 ZNF136 1 74.0 Weakly correlated
109 ZNF17 1 69.0 Weakly correlated
110 ZNF182 1 99.0 Highly correlated
111 ZNF184 1 99.0 Highly correlated
112 ZNF189 1 99.0 Highly correlated
113 ZNF214 1 99.0 Highly correlated
114 ZNF230 1 28.9 Weakly correlated
115 ZNF248 1 99.0 Highly correlated
116 ZNF253 1 19.6 Weakly correlated
117 ZNF334 1 99.0 Highly correlated
118 ZNF343 1 74.0 Weakly correlated
119 ZNF34 1 99.0 Highly correlated
120 ZNF418 1 43.0 Weakly correlated
121 ZNF420 1 94.0 Moderately correlated
122 ZNF43 1 43.0 Weakly correlated
123 ZNF44 1 43.0 Weakly correlated
124 ZNF530 1 28.9 Weakly correlated
125 ZNF567 1 99.0 Highly correlated
126 ZNF571 1 99.0 Highly correlated
127 ZNF573 1 94.0 Moderately correlated
128 ZNF607 1 43.0 Weakly correlated
129 ZNF649 1 28.9 Weakly correlated
130 ZNF674 1 99.0 Highly correlated
131 ZNF677 1 99.0 Highly correlated
132 ZNF789 1 99.0 Highly correlated
133 ZNF81 1 99.0 Highly correlated
134 ZNF84 1 99.0 Highly correlated
135 ZNF878 1 43.0 Weakly correlated
136 ZNF91 1 6.0 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF12 161 99.0 Highly correlated
2 ZNF766 43 43.0 Weakly correlated
3 ZNF333 30 99.0 Highly correlated
4 ZNF263 30 180.0 Weakly correlated
5 ZKSCAN1 26 160.0 Weakly correlated
6 ZIM3 23 87.0 Moderately correlated
7 ZNF382 18 99.0 Highly correlated
8 ZNF479 16 6.4 Weakly correlated
9 ZNF534 15 19.6 Weakly correlated
10 ZNF723 14 15.2 Weakly correlated
11 ZNF554 14 99.0 Highly correlated
12 ZNF317 12 99.0 Highly correlated
13 ZNF680 12 28.9 Weakly correlated
14 ZFP37 11 99.0 Highly correlated
15 ZNF793 11 99.0 Highly correlated
16 ZNF506 10 28.9 Weakly correlated
17 ZNF75D 8 94.0 Moderately correlated
18 ZNF589 8 28.9 Weakly correlated
19 ZNF528 8 43.0 Weakly correlated
20 ZFP57 7 87.0 Moderately correlated
21 ZNF175 6 94.0 Moderately correlated
22 ZNF2 6 99.0 Highly correlated
23 ZNF584 6 99.0 Highly correlated
24 ZNF485 6 94.0 Moderately correlated
25 ZNF141 5 43.0 Weakly correlated
26 ZNF701 5 28.9 Weakly correlated
27 ZFP69B 5 99.0 Highly correlated
28 ZNF735 5 28.9 Weakly correlated
29 ZNF490 4 43.0 Weakly correlated
30 ZNF679 4 28.9 Weakly correlated
31 ZNF197 4 99.0 Highly correlated
32 ZNF585B 3 99.0 Highly correlated
33 ZNF549 3 87.0 Moderately correlated
34 ZNF18 3 160.0 Weakly correlated
35 ZNF101 3 43.0 Weakly correlated
36 ZNF133 3 99.0 Highly correlated
37 ZNF28 3 28.9 Weakly correlated
38 ZNF597 3 94.0 Moderately correlated
39 ZNF8 2 99.0 Highly correlated
40 ZNF140 2 99.0 Highly correlated
41 ZNF283 2 99.0 Highly correlated
42 ZNF792 2 94.0 Moderately correlated
43 ZNF320 2 28.9 Weakly correlated
44 ZNF684 2 99.0 Highly correlated
45 ZNF716 2 19.6 Weakly correlated
46 ZNF251 2 94.0 Moderately correlated
47 ZNF331 2 94.0 Moderately correlated
48 ZNF675 2 8.6 Weakly correlated
49 ZNF324 2 99.0 Highly correlated
50 ZNF440 2 28.9 Weakly correlated
51 ZNF429 1 28.9 Weakly correlated
52 ZNF780A 1 43.0 Weakly correlated
53 ZNF394 1 99.0 Highly correlated
54 ZNF44 1 43.0 Weakly correlated
55 ZNF433 1 43.0 Weakly correlated
56 ZNF33A 1 99.0 Highly correlated
57 ZNF677 1 99.0 Highly correlated
58 ZNF132 1 94.0 Moderately correlated
59 ZNF81 1 99.0 Highly correlated
60 ZNF257 1 0.0 Weakly correlated
61 ZNF273 1 28.9 Weakly correlated
62 ZNF610 1 28.9 Weakly correlated
63 ZNF585A 1 99.0 Highly correlated
64 ZFP69 1 99.0 Highly correlated
65 ZNF573 1 94.0 Moderately correlated
66 ZNF84 1 99.0 Highly correlated
67 ZNF350 1 99.0 Highly correlated
68 RBAK 1 99.0 Highly correlated
69 ZNF778 1 74.0 Weakly correlated
70 ZNF530 1 28.9 Weakly correlated
71 ZNF563 1 28.9 Weakly correlated
72 ZNF34 1 99.0 Highly correlated
73 ZNF264 1 99.0 Highly correlated
74 ZNF468 1 28.9 Weakly correlated
75 ZNF641 1 99.0 Highly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZFP37 99.0 Highly correlated
2 ZFP57 87.0 Moderately correlated
3 ZKSCAN1 160.0 Weakly correlated
4 ZNF2 99.0 Highly correlated
5 ZNF793 99.0 Highly correlated