ZRdb KZFP & Repeats
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LTR_MLT1H2

  • Name
    MLT1H2
  • Repbase
    MLT1H2
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001131
Description :

Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtagactgttacattggtggcccccaatgaaccacgcctcccggtattcacgcccttgtgtagtcccctcccacattgactctgggcttggccatgtgacttgctttggccaatgggacattagcaaacgtgatgcaagcagaggcttganaagcgcttgcgcattggggcttgtcctcttggaacgctccctcttggaanccagctgccatgctgtgaagaagcccaggctagnctgctggangatgagaggccacgtggagagaggccctggaggatgagaggccatcttggacgttccagccccagccgagctcccagctgaatgcagccacatgagtgaccccagctanaccacgtggagcagaagaaccgcccagctgagcccagccaacccacagaatcgtgagaaataataaatcgttgttgttttaagccactaagttttggggtggtttgttacgcagcaatagataactgaaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF584 48 99.0 Highly correlated
2 ZNF382 9 99.0 Highly correlated
3 ZNF766 6 43.0 Weakly correlated
4 ZNF331 6 94.0 Moderately correlated
5 ZNF707 5 74.0 Weakly correlated
6 ZNF479 5 6.4 Weakly correlated
7 ZNF92 3 28.9 Weakly correlated
8 ZNF793 3 99.0 Highly correlated
9 ZNF679 3 28.9 Weakly correlated
10 ZNF554 2 99.0 Highly correlated
11 ZFP37 2 99.0 Highly correlated
12 ZIM3 2 87.0 Moderately correlated
13 ZNF723 2 15.2 Weakly correlated
14 ZKSCAN8 2 160.0 Weakly correlated
15 ZNF701 2 28.9 Weakly correlated
16 ZNF175 2 94.0 Moderately correlated
17 ZNF589 2 28.9 Weakly correlated
18 ZNF197 2 99.0 Highly correlated
19 ZNF534 2 19.6 Weakly correlated
20 ZNF320 2 28.9 Weakly correlated
21 ZNF485 1 94.0 Moderately correlated
22 ZNF528 1 43.0 Weakly correlated
23 ZNF483 1 99.0 Highly correlated
24 ZNF2 1 99.0 Highly correlated
25 ZNF225 1 74.0 Weakly correlated
26 ZNF468 1 28.9 Weakly correlated
27 ZNF597 1 94.0 Moderately correlated
28 ZNF616 1 43.0 Weakly correlated
29 ZNF41 1 99.0 Highly correlated
30 ZNF394 1 99.0 Highly correlated
31 ZNF263 1 180.0 Weakly correlated
32 ZNF284 1 43.0 Weakly correlated
33 ZKSCAN1 1 160.0 Weakly correlated
34 ZNF846 1 74.0 Weakly correlated
35 ZNF317 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF707 2 74.0 Weakly correlated
2 ZNF701 2 28.9 Weakly correlated
3 ZNF479 2 6.4 Weakly correlated
4 ZNF584 2 99.0 Highly correlated
5 ZIM3 1 87.0 Moderately correlated
6 ZNF468 1 28.9 Weakly correlated
7 ZNF485 1 94.0 Moderately correlated
8 ZNF534 1 19.6 Weakly correlated
9 ZNF723 1 15.2 Weakly correlated
10 ZNF597 1 94.0 Moderately correlated
11 ZNF846 1 74.0 Weakly correlated
12 ZNF793 1 99.0 Highly correlated
13 ZNF225 1 74.0 Weakly correlated
14 ZNF528 1 43.0 Weakly correlated
15 ZNF320 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats