ZRdb KZFP & Repeats
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LTR_MLT1H1

  • Name
    MLT1H1
  • Repbase
    MLT1H1
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001015
Description :

MLT1H1 has 5 bp TSDs, and is intermediate between MLT1G2 and MLT1H.Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtagattaaagatggccgcaaattctttgacactcctcccatcgagaggtggggtctatntcccctccccttgaatctgggctggccttagtgactgctttgaccaatagaatgcggcggaagtgacgctgtgcgacttccgaggctaggtcntaagaagccttgcagcttccgcctnggtctcttggaacgctcgctctgggagccctgagccgccatgtaagaagtccgactaccctgagaccgccatgctggagaggccacgtgnaggcgctctggtcgacagtcccagctgagcccagccttccagccatccccgccaaggcgccagacatgtgagtgaagccgtcttggaccctccagaccagcccanccgccagctgaataccaccgagtgacctcagtcgacgccacgtggagcagaagaaccgcccagctgagccctgcccgaattcctgacccacaaaatcgtgaganataataaaatggttgttgttttaagccactaagttttggggtagtttgttacgcagcaatagataaccggaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF584 23 99.0 Highly correlated
2 ZNF331 15 94.0 Moderately correlated
3 ZNF479 9 6.4 Weakly correlated
4 ZIM3 8 87.0 Moderately correlated
5 ZNF707 8 74.0 Weakly correlated
6 ZNF766 6 43.0 Weakly correlated
7 ZNF382 5 99.0 Highly correlated
8 ZNF701 4 28.9 Weakly correlated
9 ZNF679 4 28.9 Weakly correlated
10 ZNF723 3 15.2 Weakly correlated
11 ZNF175 3 94.0 Moderately correlated
12 ZNF320 3 28.9 Weakly correlated
13 ZNF534 3 19.6 Weakly correlated
14 ZNF558 2 99.0 Highly correlated
15 ZNF793 2 99.0 Highly correlated
16 ZNF589 2 28.9 Weakly correlated
17 ZNF274 2 99.0 Highly correlated
18 ZNF263 1 180.0 Weakly correlated
19 ZNF92 1 28.9 Weakly correlated
20 ZNF846 1 74.0 Weakly correlated
21 ZNF823 1 43.0 Weakly correlated
22 ZNF799 1 43.0 Weakly correlated
23 ZKSCAN1 1 160.0 Weakly correlated
24 ZNF780A 1 43.0 Weakly correlated
25 ZKSCAN8 1 160.0 Weakly correlated
26 ZNF133 1 99.0 Highly correlated
27 ZNF554 1 99.0 Highly correlated
28 ZNF695 1 28.9 Weakly correlated
29 ZNF28 1 28.9 Weakly correlated
30 ZNF425 1 94.0 Moderately correlated
31 ZNF585A 1 99.0 Highly correlated
32 ZNF43 1 43.0 Weakly correlated
33 ZNF577 1 94.0 Moderately correlated
34 ZFP57 1 87.0 Moderately correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF479 7 6.4 Weakly correlated
2 ZIM3 5 87.0 Moderately correlated
3 ZNF707 4 74.0 Weakly correlated
4 ZNF534 2 19.6 Weakly correlated
5 ZNF320 2 28.9 Weakly correlated
6 ZNF263 1 180.0 Weakly correlated
7 ZNF723 1 15.2 Weakly correlated
8 ZNF766 1 43.0 Weakly correlated
9 ZNF382 1 99.0 Highly correlated
10 ZNF701 1 28.9 Weakly correlated
11 ZNF780A 1 43.0 Weakly correlated
12 ZNF584 1 99.0 Highly correlated
13 ZNF589 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats