ZRdb KZFP & Repeats
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LTR_MLT1H

  • Name
    MLT1H
  • Repbase
    MLT1H
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001014
Description :

MLT1H has 5 bp TSDs. Note that a full-length ERV-MaLR (Mammalianapparent LTR retrotransposon) element is derived from an ERV (EndogenousRetrovirus), but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggtagattgattgcaaaaatggccncaattcttcacccctccctgtatccacgccctttgcaatgtgactttgcagctcctcccatcaagaggtggagtctatttccccaccccttgaatctgggctggccttgtgacttgctttggccaatagaatgcggcggaagtgacgntgtgccagttccgagcctaggcctcaagaggccttgcacgcttccgctctctctcttggaaccctgccaccgccatgtgaacaagcccgggctagcctgctggaggatgagagaccacgtggagcagagccgagccgtcccagctgaggccatcctagaccagccagcccccagccaagatcagcagagccgcctacccgacccgcagctgaccgcagacgcatgagtgagcccagccgagaccagaagaaccgcccagctgagcccagcccaaattgccgacccacagaatcgtgagctaaaataaatggttgttgttttaagccactaagttttggggtggtttgttacgcagcaatagctaactgataca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF331 1165 94.0 Moderately correlated
2 ZNF382 556 99.0 Highly correlated
3 ZNF766 289 43.0 Weakly correlated
4 ZNF283 179 99.0 Highly correlated
5 ZNF554 159 99.0 Highly correlated
6 ZNF394 153 99.0 Highly correlated
7 ZNF263 145 180.0 Weakly correlated
8 ZNF317 133 99.0 Highly correlated
9 ZNF589 123 28.9 Weakly correlated
10 ZNF175 118 94.0 Moderately correlated
11 ZNF680 96 28.9 Weakly correlated
12 ZNF584 88 99.0 Highly correlated
13 ZFP37 84 99.0 Highly correlated
14 ZKSCAN8 80 160.0 Weakly correlated
15 ZNF18 77 160.0 Weakly correlated
16 ZIM3 74 87.0 Moderately correlated
17 ZKSCAN1 71 160.0 Weakly correlated
18 ZNF197 65 99.0 Highly correlated
19 ZNF534 65 19.6 Weakly correlated
20 ZFP69B 63 99.0 Highly correlated
21 ZNF793 62 99.0 Highly correlated
22 ZNF324 61 99.0 Highly correlated
23 ZNF2 58 99.0 Highly correlated
24 ZNF479 57 6.4 Weakly correlated
25 ZNF558 53 99.0 Highly correlated
26 ZNF486 47 8.6 Weakly correlated
27 ZNF101 42 43.0 Weakly correlated
28 ZNF610 36 28.9 Weakly correlated
29 ZNF679 36 28.9 Weakly correlated
30 ZNF333 34 99.0 Highly correlated
31 ZNF597 32 94.0 Moderately correlated
32 ZNF723 32 15.2 Weakly correlated
33 ZNF490 31 43.0 Weakly correlated
34 ZNF701 31 28.9 Weakly correlated
35 ZNF257 26 0.0 Weakly correlated
36 ZNF705B 26 28.9 Weakly correlated
37 ZNF506 25 28.9 Weakly correlated
38 ZNF677 25 99.0 Highly correlated
39 ZNF577 24 94.0 Moderately correlated
40 ZNF705D 24 28.9 Weakly correlated
41 ZNF528 23 43.0 Weakly correlated
42 ZNF549 23 87.0 Moderately correlated
43 ZNF274 22 99.0 Highly correlated
44 ZNF792 22 94.0 Moderately correlated
45 ZNF320 20 28.9 Weakly correlated
46 ZFP57 18 87.0 Moderately correlated
47 ZNF707 16 74.0 Weakly correlated
48 ZNF133 15 99.0 Highly correlated
49 ZNF547 15 74.0 Weakly correlated
50 ZNF682 14 28.9 Weakly correlated
51 ZNF251 13 94.0 Moderately correlated
52 ZNF778 13 74.0 Weakly correlated
53 ZNF75D 12 94.0 Moderately correlated
54 ZNF92 12 28.9 Weakly correlated
55 ZNF140 11 99.0 Highly correlated
56 ZNF264 9 99.0 Highly correlated
57 ZNF519 9 19.6 Weakly correlated
58 ZNF273 8 28.9 Weakly correlated
59 ZNF304 8 99.0 Highly correlated
60 ZNF350 8 99.0 Highly correlated
61 ZNF485 8 94.0 Moderately correlated
62 RBAK 7 99.0 Highly correlated
63 ZNF222 7 43.0 Weakly correlated
64 ZNF28 7 28.9 Weakly correlated
65 ZNF563 7 28.9 Weakly correlated
66 ZNF585A 7 99.0 Highly correlated
67 ZNF8 7 99.0 Highly correlated
68 ZNF429 6 28.9 Weakly correlated
69 ZNF641 6 99.0 Highly correlated
70 ZNF695 6 28.9 Weakly correlated
71 ZNF93 6 8.6 Weakly correlated
72 ZKSCAN5 5 160.0 Weakly correlated
73 ZNF100 5 28.9 Weakly correlated
74 ZNF425 5 94.0 Moderately correlated
75 ZNF471 5 94.0 Moderately correlated
76 ZNF585B 5 99.0 Highly correlated
77 ZNF671 5 94.0 Moderately correlated
78 ZNF735 5 28.9 Weakly correlated
79 ZNF799 5 43.0 Weakly correlated
80 ZNF141 4 43.0 Weakly correlated
81 ZNF169 4 94.0 Moderately correlated
82 ZNF26 4 99.0 Highly correlated
83 ZNF440 4 28.9 Weakly correlated
84 ZNF44 4 43.0 Weakly correlated
85 ZNF565 4 99.0 Highly correlated
86 ZNF808 4 19.6 Weakly correlated
87 ZNF823 4 43.0 Weakly correlated
88 ZNF157 3 99.0 Highly correlated
89 ZNF182 3 99.0 Highly correlated
90 ZNF214 3 99.0 Highly correlated
91 ZNF284 3 43.0 Weakly correlated
92 ZNF334 3 99.0 Highly correlated
93 ZNF33A 3 99.0 Highly correlated
94 ZNF582 3 99.0 Highly correlated
95 ZNF611 3 19.6 Weakly correlated
96 ZNF616 3 43.0 Weakly correlated
97 ZNF674 3 99.0 Highly correlated
98 ZNF684 3 99.0 Highly correlated
99 ZNF777 3 319.0 Weakly correlated
100 ZNF816 3 28.9 Weakly correlated
101 ZNF230 2 28.9 Weakly correlated
102 ZNF248 2 99.0 Highly correlated
103 ZNF282 2 319.0 Weakly correlated
104 ZNF343 2 74.0 Weakly correlated
105 ZNF34 2 99.0 Highly correlated
106 ZNF41 2 99.0 Highly correlated
107 ZNF441 2 43.0 Weakly correlated
108 ZNF468 2 28.9 Weakly correlated
109 ZNF573 2 94.0 Moderately correlated
110 ZNF605 2 99.0 Highly correlated
111 ZNF613 2 99.0 Highly correlated
112 ZNF77 2 87.0 Moderately correlated
113 ZNF780A 2 43.0 Weakly correlated
114 ZNF91 2 6.0 Weakly correlated
115 ZFP69 1 99.0 Highly correlated
116 ZIK1 1 87.0 Moderately correlated
117 ZNF114 1 28.9 Weakly correlated
118 ZNF12 1 99.0 Highly correlated
119 ZNF136 1 74.0 Weakly correlated
120 ZNF160 1 74.0 Weakly correlated
121 ZNF17 1 69.0 Weakly correlated
122 ZNF19 1 99.0 Highly correlated
123 ZNF202 1 160.0 Weakly correlated
124 ZNF254 1 43.0 Weakly correlated
125 ZNF337 1 43.0 Weakly correlated
126 ZNF347 1 43.0 Weakly correlated
127 ZNF418 1 43.0 Weakly correlated
128 ZNF420 1 94.0 Moderately correlated
129 ZNF433 1 43.0 Weakly correlated
130 ZNF436 1 180.0 Weakly correlated
131 ZNF567 1 99.0 Highly correlated
132 ZNF568 1 99.0 Highly correlated
133 ZNF570 1 99.0 Highly correlated
134 ZNF571 1 99.0 Highly correlated
135 ZNF583 1 99.0 Highly correlated
136 ZNF595 1 43.0 Weakly correlated
137 ZNF649 1 28.9 Weakly correlated
138 ZNF658 1 99.0 Highly correlated
139 ZNF727 1 19.6 Weakly correlated
140 ZNF728 1 19.6 Weakly correlated
141 ZNF765 1 8.6 Weakly correlated
142 ZNF786 1 99.0 Highly correlated
143 ZNF789 1 99.0 Highly correlated
144 ZNF81 1 99.0 Highly correlated
145 ZNF84 1 99.0 Highly correlated
146 ZNF878 1 43.0 Weakly correlated
147 ZNF891 1 99.0 Highly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF331 465 94.0 Moderately correlated
2 ZNF283 164 99.0 Highly correlated
3 ZNF554 40 99.0 Highly correlated
4 ZNF534 38 19.6 Weakly correlated
5 ZIM3 32 87.0 Moderately correlated
6 ZNF317 32 99.0 Highly correlated
7 ZNF333 28 99.0 Highly correlated
8 ZNF793 28 99.0 Highly correlated
9 ZNF263 27 180.0 Weakly correlated
10 ZNF680 23 28.9 Weakly correlated
11 ZNF479 22 6.4 Weakly correlated
12 ZNF677 22 99.0 Highly correlated
13 ZNF766 19 43.0 Weakly correlated
14 ZNF257 16 0.0 Weakly correlated
15 ZNF382 16 99.0 Highly correlated
16 ZNF723 13 15.2 Weakly correlated
17 ZFP37 13 99.0 Highly correlated
18 ZNF549 12 87.0 Moderately correlated
19 ZNF589 12 28.9 Weakly correlated
20 ZNF506 11 28.9 Weakly correlated
21 ZNF701 8 28.9 Weakly correlated
22 ZNF304 8 99.0 Highly correlated
23 ZNF597 8 94.0 Moderately correlated
24 ZNF175 7 94.0 Moderately correlated
25 ZNF18 7 160.0 Weakly correlated
26 ZNF490 7 43.0 Weakly correlated
27 ZNF197 7 99.0 Highly correlated
28 ZNF101 7 43.0 Weakly correlated
29 ZNF584 6 99.0 Highly correlated
30 ZNF133 6 99.0 Highly correlated
31 ZNF528 5 43.0 Weakly correlated
32 ZNF324 5 99.0 Highly correlated
33 ZNF792 5 94.0 Moderately correlated
34 ZFP57 5 87.0 Moderately correlated
35 ZKSCAN8 5 160.0 Weakly correlated
36 ZNF320 4 28.9 Weakly correlated
37 ZKSCAN5 4 160.0 Weakly correlated
38 ZNF75D 4 94.0 Moderately correlated
39 ZNF705D 4 28.9 Weakly correlated
40 ZNF585A 4 99.0 Highly correlated
41 ZNF671 3 94.0 Moderately correlated
42 ZNF684 3 99.0 Highly correlated
43 ZNF100 3 28.9 Weakly correlated
44 ZNF429 3 28.9 Weakly correlated
45 ZNF735 3 28.9 Weakly correlated
46 ZNF44 3 43.0 Weakly correlated
47 ZNF350 3 99.0 Highly correlated
48 ZNF705B 3 28.9 Weakly correlated
49 ZNF485 3 94.0 Moderately correlated
50 ZNF2 3 99.0 Highly correlated
51 ZNF486 3 8.6 Weakly correlated
52 ZNF679 3 28.9 Weakly correlated
53 ZNF565 3 99.0 Highly correlated
54 ZNF558 3 99.0 Highly correlated
55 ZNF610 2 28.9 Weakly correlated
56 ZFP69B 2 99.0 Highly correlated
57 ZNF778 2 74.0 Weakly correlated
58 ZNF519 2 19.6 Weakly correlated
59 ZNF140 2 99.0 Highly correlated
60 ZNF468 2 28.9 Weakly correlated
61 ZNF547 2 74.0 Weakly correlated
62 ZNF343 2 74.0 Weakly correlated
63 ZNF28 2 28.9 Weakly correlated
64 ZNF563 2 28.9 Weakly correlated
65 ZNF674 1 99.0 Highly correlated
66 ZNF273 1 28.9 Weakly correlated
67 ZNF816 1 28.9 Weakly correlated
68 ZNF789 1 99.0 Highly correlated
69 ZNF571 1 99.0 Highly correlated
70 ZIK1 1 87.0 Moderately correlated
71 ZNF141 1 43.0 Weakly correlated
72 ZNF33A 1 99.0 Highly correlated
73 ZNF347 1 43.0 Weakly correlated
74 ZNF707 1 74.0 Weakly correlated
75 ZNF808 1 19.6 Weakly correlated
76 ZNF251 1 94.0 Moderately correlated
77 ZNF433 1 43.0 Weakly correlated
78 ZNF582 1 99.0 Highly correlated
79 ZNF264 1 99.0 Highly correlated
80 ZNF81 1 99.0 Highly correlated
81 ZNF595 1 43.0 Weakly correlated
82 ZNF695 1 28.9 Weakly correlated
83 ZNF780A 1 43.0 Weakly correlated
84 ZNF202 1 160.0 Weakly correlated
85 ZNF573 1 94.0 Moderately correlated
86 ZNF254 1 43.0 Weakly correlated
87 ZNF34 1 99.0 Highly correlated
88 ZNF41 1 99.0 Highly correlated
89 ZNF577 1 94.0 Moderately correlated
90 ZNF682 1 28.9 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF317 99.0 Highly correlated
3 ZNF331 94.0 Moderately correlated
4 ZNF677 99.0 Highly correlated
5 ZNF680 28.9 Weakly correlated
6 ZNF766 43.0 Weakly correlated
7 ZNF793 99.0 Highly correlated