LTR_MLT1H-INT
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NameMLT1H-INT
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RepbaseMLT1H_I
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TypeLTR
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Emergence99.0 Mya
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Dfam Id
Description :
MLT1H-int has an ORF (pos. ~49-1188) derived from an ERVL Gag protein.Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence
:
gaaattggtacctagaagtggggtgctgccgtaacaaaaacctaaaacatgtggcattggctttgggaccgggcggcgggcagaggctggaaaagcgncgaggagactgttagtggaggctggaagagcagtgaggaaactgctattggaggctggaaaaanggcgacccgtgttatgtagtggcggaacanttggcaaaactgtcgcctgcggtaacntggaagatagaaaatgtacctaatgaacttgtggatctggctaaggagatttccaggcagaatgttgaaagtgccaactggcttcttttagctgcgtatgataaggtacggnaagagagagatgagctaaagaaggaactgttcagtttncaagcagaatttagaggaaatatagagganccaggacttgctgggttggaaaataaaactgtttctcatctccagtctctccagccggcaaaagattctcaaagtaagaaatggcctcagggcaaagatcaaatcaagggtgtggctgtaagaccctttgttaagacctcagaaagatttaaggcggtgcctngtagaccctctcagctagacaaaagggcttctaagaatcttaagggcgttgtcccacagcagcctgacacgcagcccaaagtagagagaggcctgtctcgaaaagaattgtgggtgtggcttttgtcnaatggagtggactnnaatnngatncataggaaacccacaaagtttttaagagaattgtattggcaaaagcaccgccagcttggactaaaagggacagagacagttcaaaatgaaaagaggcctctgggcccccaactttctacgggcaggaagcaggctgagaaagctactcagctgcaaacacgggccatttcttatggaaaaggaaggacgnctcagagggcagagccaagagcccagagggcggagccaagagccanggagaacaatggactagggaaccactcccagggagcagaaccgggccctaatcaaggaacattccctgcccccggagtaggggaacctggcaacatgtgcccggctggatttcagaattgctatggaccagtgactgctatgtgcctcccattcttcccctttttgaatgggagtgtctattgcggttatcctgtccctgtctcaccattgtatgttgggtgtgtggggggcagataacttgtctttttagttcacaggtctccggatcaagaggagccacaccctgaggagctgcacccgaggagcctcatccgcatccggacctgatntagatnacgagatcctggacttcgagcctgatgccgtaattggatgagacttttgggggtcttgggangggggtgagcgtattttgcatgtgggaggaatgtgaataatttgtggccagagggcagact
Repeats structure
:
Peak overlapping
:
| # | KZFP name | Record number | KZFP age(Mya) | Time correlation with Repeats | |
|---|---|---|---|---|---|
| 1 | ZNF584 | 71 | 99.0 | Highly correlated | |
| 2 | ZNF382 | 22 | 99.0 | Highly correlated | |
| 3 | ZNF707 | 17 | 74.0 | Weakly correlated | |
| 4 | ZIM3 | 16 | 87.0 | Moderately correlated | |
| 5 | ZNF394 | 10 | 99.0 | Highly correlated | |
| 6 | ZNF317 | 9 | 99.0 | Highly correlated | |
| 7 | ZNF331 | 7 | 94.0 | Moderately correlated | |
| 8 | ZNF723 | 6 | 15.2 | Weakly correlated | |
| 9 | ZNF479 | 5 | 6.4 | Weakly correlated | |
| 10 | ZNF680 | 5 | 28.9 | Weakly correlated | |
| 11 | ZNF274 | 5 | 99.0 | Highly correlated | |
| 12 | ZNF766 | 4 | 43.0 | Weakly correlated | |
| 13 | ZNF679 | 4 | 28.9 | Weakly correlated | |
| 14 | ZNF75D | 3 | 94.0 | Moderately correlated | |
| 15 | ZNF263 | 3 | 180.0 | Weakly correlated | |
| 16 | ZNF257 | 3 | 0.0 | Weakly correlated | |
| 17 | ZNF701 | 3 | 28.9 | Weakly correlated | |
| 18 | ZNF793 | 3 | 99.0 | Highly correlated | |
| 19 | ZNF101 | 3 | 43.0 | Weakly correlated | |
| 20 | ZNF846 | 3 | 74.0 | Weakly correlated | |
| 21 | ZFP57 | 3 | 87.0 | Moderately correlated | |
| 22 | ZNF485 | 3 | 94.0 | Moderately correlated | |
| 23 | ZNF534 | 2 | 19.6 | Weakly correlated | |
| 24 | ZNF549 | 2 | 87.0 | Moderately correlated | |
| 25 | ZNF677 | 2 | 99.0 | Highly correlated | |
| 26 | ZNF92 | 2 | 28.9 | Weakly correlated | |
| 27 | ZFP37 | 2 | 99.0 | Highly correlated | |
| 28 | ZNF140 | 2 | 99.0 | Highly correlated | |
| 29 | ZNF320 | 2 | 28.9 | Weakly correlated | |
| 30 | ZNF28 | 1 | 28.9 | Weakly correlated | |
| 31 | ZFP82 | 1 | 99.0 | Highly correlated | |
| 32 | ZNF780A | 1 | 43.0 | Weakly correlated | |
| 33 | ZNF77 | 1 | 87.0 | Moderately correlated | |
| 34 | ZNF251 | 1 | 94.0 | Moderately correlated | |
| 35 | ZNF26 | 1 | 99.0 | Highly correlated | |
| 36 | ZNF730 | 1 | 19.6 | Weakly correlated | |
| 37 | ZNF283 | 1 | 99.0 | Highly correlated | |
| 38 | ZNF716 | 1 | 19.6 | Weakly correlated | |
| 39 | ZNF287 | 1 | 99.0 | Highly correlated | |
| 40 | ZNF705B | 1 | 28.9 | Weakly correlated | |
| 41 | ZFP28 | 1 | 99.0 | Highly correlated | |
| 42 | ZNF334 | 1 | 99.0 | Highly correlated | |
| 43 | ZNF429 | 1 | 28.9 | Weakly correlated | |
| 44 | ZNF627 | 1 | 74.0 | Weakly correlated | |
| 45 | ZNF597 | 1 | 94.0 | Moderately correlated | |
| 46 | ZNF589 | 1 | 28.9 | Weakly correlated | |
| 47 | ZNF585A | 1 | 99.0 | Highly correlated | |
| 48 | ZNF440 | 1 | 28.9 | Weakly correlated | |
| 49 | ZNF567 | 1 | 99.0 | Highly correlated | |
| 50 | ZNF558 | 1 | 99.0 | Highly correlated | |
| 51 | ZNF554 | 1 | 99.0 | Highly correlated | |
| 52 | ZNF486 | 1 | 8.6 | Weakly correlated |
KZFPs Motif in Repeats
:
| # | KZFP name | Record number | KZFP age(Mya) | Time correlation with Repeats | |
|---|---|---|---|---|---|
| 1 | ZNF707 | 8 | 74.0 | Weakly correlated | |
| 2 | ZIM3 | 5 | 87.0 | Moderately correlated | |
| 3 | ZNF723 | 4 | 15.2 | Weakly correlated | |
| 4 | ZNF382 | 4 | 99.0 | Highly correlated | |
| 5 | ZNF479 | 3 | 6.4 | Weakly correlated | |
| 6 | ZNF257 | 3 | 0.0 | Weakly correlated | |
| 7 | ZNF677 | 2 | 99.0 | Highly correlated | |
| 8 | ZNF846 | 2 | 74.0 | Weakly correlated | |
| 9 | ZNF485 | 2 | 94.0 | Moderately correlated | |
| 10 | ZNF534 | 1 | 19.6 | Weakly correlated | |
| 11 | ZNF287 | 1 | 99.0 | Highly correlated | |
| 12 | ZNF549 | 1 | 87.0 | Moderately correlated | |
| 13 | ZNF701 | 1 | 28.9 | Weakly correlated | |
| 14 | ZNF394 | 1 | 99.0 | Highly correlated | |
| 15 | ZNF766 | 1 | 43.0 | Weakly correlated | |
| 16 | ZNF75D | 1 | 94.0 | Moderately correlated | |
| 17 | ZFP28 | 1 | 99.0 | Highly correlated | |
| 18 | ZNF680 | 1 | 28.9 | Weakly correlated | |
| 19 | ZNF679 | 1 | 28.9 | Weakly correlated | |
| 20 | ZNF793 | 1 | 99.0 | Highly correlated | |
| 21 | ZNF26 | 1 | 99.0 | Highly correlated | |
| 22 | ZNF263 | 1 | 180.0 | Weakly correlated | |
| 23 | ZNF585A | 1 | 99.0 | Highly correlated | |
| 24 | ZNF320 | 1 | 28.9 | Weakly correlated | |
| 25 | ZNF584 | 1 | 99.0 | Highly correlated | |
| 26 | ZNF101 | 1 | 43.0 | Weakly correlated | |
| 27 | ZFP57 | 1 | 87.0 | Moderately correlated | |
| 28 | ZFP37 | 1 | 99.0 | Highly correlated |
KZFPs Motif in Repeats Consensus
:
| # | KZFP name | KZFP age(Mya) | Time correlation with Repeats |
|---|