ZRdb KZFP & Repeats
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LTR_MLT1G3

  • Name
    MLT1G3
  • Repbase
    MLT1G3
  • Type
    LTR
  • Emergence
    99.0 Mya
  • Dfam Id
    DF0001013
Description :

Note that a full-length ERV-MaLR (Mammalian apparent LTRretrotransposon) element is derived from an ERV (Endogenous Retrovirus),but only contains the Gag gene (that is, no Pol or Env).
Consensus sequence The consensus sequences obtained from Dfam are derived from the seed alignment using a specialized caller. :
tgtggcagattgtattttccaaagatggccgcaacaatatctcccatcccacatgctcttcttacaatgtgaccttgacactcctcccatcgagaggtggggtctatgtcccctccccttgaatctgggcgggcctttgtgactgcctcgaccaatagaatacggcggaagtgacgctgtgtgacttccgaggctaggtcataaaaaggccatgcagcttccgccttgctctcttgggacgctcgctcttggaacccagccgccatgctgtgaggaagcccaagccacatggagaggccacgtgtaggtgttccggccgacagccccagctgaggtcccagccgacagccagcatcaaccgccagacatgtgagtgaagaagcctccagatgattccagcccccagccgtcgagtcacccccagccttcgagtcttcccagctgaggccccagacatcgtggagcagagacaagccatccccgctgtgccctgtccgaattcctgacccacagaatccgtgagcataataaaatggttgttttangccactaagttttggggtggtttgttacgcagcaatagataactggaaca
Repeats structure For certain families, there exists a curated collection of TE-derived proteins, which constitutes a non-redundant set. As a results, several families may lack an associated coding sequences directly linked to them. The annotation for these families is obtained from Dfam. :
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Peak overlapping A ChIP-seq peak of KZFPs that intersects with a certain repeats sequence on the genome. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF382 119 99.0 Highly correlated
2 ZNF565 117 99.0 Highly correlated
3 ZNF331 113 94.0 Moderately correlated
4 ZNF479 86 6.4 Weakly correlated
5 ZNF766 72 43.0 Weakly correlated
6 ZNF263 61 180.0 Weakly correlated
7 ZNF589 35 28.9 Weakly correlated
8 ZNF350 33 99.0 Highly correlated
9 ZNF554 33 99.0 Highly correlated
10 ZNF793 33 99.0 Highly correlated
11 ZNF394 31 99.0 Highly correlated
12 ZNF175 30 94.0 Moderately correlated
13 ZIM3 27 87.0 Moderately correlated
14 ZNF18 27 160.0 Weakly correlated
15 ZNF317 26 99.0 Highly correlated
16 ZKSCAN8 25 160.0 Weakly correlated
17 ZNF257 23 0.0 Weakly correlated
18 ZNF680 23 28.9 Weakly correlated
19 ZNF705B 23 28.9 Weakly correlated
20 ZNF584 22 99.0 Highly correlated
21 ZKSCAN1 21 160.0 Weakly correlated
22 ZNF197 20 99.0 Highly correlated
23 ZNF534 19 19.6 Weakly correlated
24 ZFP37 18 99.0 Highly correlated
25 ZNF2 17 99.0 Highly correlated
26 ZNF324 15 99.0 Highly correlated
27 ZNF679 14 28.9 Weakly correlated
28 ZNF723 14 15.2 Weakly correlated
29 ZNF320 13 28.9 Weakly correlated
30 ZNF705D 13 28.9 Weakly correlated
31 ZFP69B 12 99.0 Highly correlated
32 ZNF528 11 43.0 Weakly correlated
33 ZNF101 10 43.0 Weakly correlated
34 ZNF274 10 99.0 Highly correlated
35 ZNF597 10 94.0 Moderately correlated
36 ZFP57 8 87.0 Moderately correlated
37 ZNF251 8 94.0 Moderately correlated
38 ZNF485 8 94.0 Moderately correlated
39 ZNF486 8 8.6 Weakly correlated
40 ZNF506 8 28.9 Weakly correlated
41 ZNF549 8 87.0 Moderately correlated
42 ZNF701 8 28.9 Weakly correlated
43 ZNF707 8 74.0 Weakly correlated
44 ZKSCAN5 6 160.0 Weakly correlated
45 ZNF558 6 99.0 Highly correlated
46 ZFP28 5 99.0 Highly correlated
47 ZNF273 5 28.9 Weakly correlated
48 ZNF610 5 28.9 Weakly correlated
49 ZNF8 5 99.0 Highly correlated
50 ZNF169 4 94.0 Moderately correlated
51 ZNF304 4 99.0 Highly correlated
52 ZNF468 4 28.9 Weakly correlated
53 ZNF792 4 94.0 Moderately correlated
54 ZNF133 3 99.0 Highly correlated
55 ZNF17 3 69.0 Weakly correlated
56 ZNF264 3 99.0 Highly correlated
57 ZNF519 3 19.6 Weakly correlated
58 ZNF674 3 99.0 Highly correlated
59 ZNF735 3 28.9 Weakly correlated
60 ZNF75D 3 94.0 Moderately correlated
61 ZNF778 3 74.0 Weakly correlated
62 ZFP69 2 99.0 Highly correlated
63 ZNF140 2 99.0 Highly correlated
64 ZNF141 2 43.0 Weakly correlated
65 ZNF248 2 99.0 Highly correlated
66 ZNF28 2 28.9 Weakly correlated
67 ZNF429 2 28.9 Weakly correlated
68 ZNF436 2 180.0 Weakly correlated
69 ZNF441 2 43.0 Weakly correlated
70 ZNF490 2 43.0 Weakly correlated
71 ZNF573 2 94.0 Moderately correlated
72 ZNF669 2 43.0 Weakly correlated
73 ZNF695 2 28.9 Weakly correlated
74 ZNF823 2 43.0 Weakly correlated
75 ZNF92 2 28.9 Weakly correlated
76 ZNF93 2 8.6 Weakly correlated
77 ZKSCAN3 1 99.0 Highly correlated
78 ZNF12 1 99.0 Highly correlated
79 ZNF160 1 74.0 Weakly correlated
80 ZNF184 1 99.0 Highly correlated
81 ZNF225 1 74.0 Weakly correlated
82 ZNF282 1 319.0 Weakly correlated
83 ZNF30 1 94.0 Moderately correlated
84 ZNF333 1 99.0 Highly correlated
85 ZNF334 1 99.0 Highly correlated
86 ZNF343 1 74.0 Weakly correlated
87 ZNF417 1 28.9 Weakly correlated
88 ZNF418 1 43.0 Weakly correlated
89 ZNF425 1 94.0 Moderately correlated
90 ZNF433 1 43.0 Weakly correlated
91 ZNF471 1 94.0 Moderately correlated
92 ZNF483 1 99.0 Highly correlated
93 ZNF510 1 99.0 Highly correlated
94 ZNF547 1 74.0 Weakly correlated
95 ZNF559 1 74.0 Weakly correlated
96 ZNF571 1 99.0 Highly correlated
97 ZNF585A 1 99.0 Highly correlated
98 ZNF585B 1 99.0 Highly correlated
99 ZNF587 1 28.9 Weakly correlated
100 ZNF596 1 94.0 Moderately correlated
101 ZNF607 1 43.0 Weakly correlated
102 ZNF641 1 99.0 Highly correlated
103 ZNF671 1 94.0 Moderately correlated
104 ZNF677 1 99.0 Highly correlated
105 ZNF69 1 28.9 Weakly correlated
106 ZNF700 1 28.9 Weakly correlated
107 ZNF780A 1 43.0 Weakly correlated
108 ZNF786 1 99.0 Highly correlated
109 ZNF808 1 19.6 Weakly correlated
110 ZNF81 1 99.0 Highly correlated
111 ZNF84 1 99.0 Highly correlated
112 ZNF850 1 28.9 Weakly correlated
KZFPs Motif in Repeats The motif of KZFPs found by the meme-chip appears in the repeats sequence. :
# KZFP name Record number KZFP age(Mya) Time correlation with Repeats
1 ZNF565 114 99.0 Highly correlated
2 ZNF479 70 6.4 Weakly correlated
3 ZNF331 43 94.0 Moderately correlated
4 ZNF350 23 99.0 Highly correlated
5 ZNF263 19 180.0 Weakly correlated
6 ZNF793 18 99.0 Highly correlated
7 ZNF534 12 19.6 Weakly correlated
8 ZNF680 9 28.9 Weakly correlated
9 ZNF257 8 0.0 Weakly correlated
10 ZNF554 7 99.0 Highly correlated
11 ZNF766 6 43.0 Weakly correlated
12 ZIM3 6 87.0 Moderately correlated
13 ZNF317 5 99.0 Highly correlated
14 ZNF175 5 94.0 Moderately correlated
15 ZNF320 5 28.9 Weakly correlated
16 ZNF382 4 99.0 Highly correlated
17 ZNF304 4 99.0 Highly correlated
18 ZFP37 4 99.0 Highly correlated
19 ZNF485 3 94.0 Moderately correlated
20 ZNF584 3 99.0 Highly correlated
21 ZNF251 3 94.0 Moderately correlated
22 ZNF2 3 99.0 Highly correlated
23 ZFP57 3 87.0 Moderately correlated
24 ZNF468 3 28.9 Weakly correlated
25 ZNF18 3 160.0 Weakly correlated
26 ZNF735 3 28.9 Weakly correlated
27 ZNF705D 3 28.9 Weakly correlated
28 ZNF589 3 28.9 Weakly correlated
29 ZNF506 3 28.9 Weakly correlated
30 ZKSCAN5 3 160.0 Weakly correlated
31 ZFP69 2 99.0 Highly correlated
32 ZNF549 2 87.0 Moderately correlated
33 ZNF274 2 99.0 Highly correlated
34 ZNF197 2 99.0 Highly correlated
35 ZNF573 2 94.0 Moderately correlated
36 ZNF101 2 43.0 Weakly correlated
37 ZNF674 2 99.0 Highly correlated
38 ZNF75D 2 94.0 Moderately correlated
39 ZNF169 2 94.0 Moderately correlated
40 ZNF705B 2 28.9 Weakly correlated
41 ZNF558 2 99.0 Highly correlated
42 ZNF723 2 15.2 Weakly correlated
43 ZNF823 1 43.0 Weakly correlated
44 ZNF792 1 94.0 Moderately correlated
45 ZNF528 1 43.0 Weakly correlated
46 ZNF273 1 28.9 Weakly correlated
47 ZNF490 1 43.0 Weakly correlated
48 ZNF343 1 74.0 Weakly correlated
49 ZNF596 1 94.0 Moderately correlated
50 ZNF519 1 19.6 Weakly correlated
51 ZNF81 1 99.0 Highly correlated
52 ZNF677 1 99.0 Highly correlated
53 ZNF701 1 28.9 Weakly correlated
54 ZNF433 1 43.0 Weakly correlated
55 ZNF597 1 94.0 Moderately correlated
56 ZNF695 1 28.9 Weakly correlated
57 ZNF429 1 28.9 Weakly correlated
58 ZNF141 1 43.0 Weakly correlated
59 ZNF133 1 99.0 Highly correlated
60 ZKSCAN1 1 160.0 Weakly correlated
KZFPs Motif in Repeats Consensus The motif of KZFPs found by the meme-chip can find the corresponding region on the consensus sequence of repeats. :
# KZFP name KZFP age(Mya) Time correlation with Repeats
1 ZNF257 0.0 Weakly correlated
2 ZNF331 94.0 Moderately correlated
3 ZNF479 6.4 Weakly correlated
4 ZNF554 99.0 Highly correlated
5 ZNF565 99.0 Highly correlated
6 ZNF793 99.0 Highly correlated